Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 2.8e-128 461.8 217 100.0
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.0e-103 377.5 221 78.7
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 9.1e-103 377.1 227 75.3
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.0e-101 373.6 221 78.7
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 8.0e-99 364.0 221 76.0
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.9e-93 345.5 213 72.3
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 2.6e-89 332.4 227 67.4
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 1.8e-87 326.2 315 54.0
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 1.2e-86 323.6 215 68.4
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.2e-86 323.6 220 67.7
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 1.6e-86 323.2 220 67.7
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.0e-86 322.8 214 67.3
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.0e-85 320.5 224 65.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.7e-85 319.7 214 68.2
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.0e-85 318.9 234 64.1
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.9e-85 318.5 229 62.0
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 6.6e-85 317.8 229 62.0
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 8.6e-85 317.4 229 65.1
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 8.6e-85 317.4 224 65.6
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.9e-84 316.2 229 61.6
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.9e-84 316.2 229 61.6
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.9e-84 316.2 214 66.4
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.5e-84 315.8 225 67.1
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.5e-84 315.8 225 67.1
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 4.3e-84 315.1 229 66.4
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 9.5e-84 313.9 209 69.9
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 9.5e-84 313.9 216 66.7
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.2e-83 313.5 230 65.7
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.6e-83 313.2 226 63.7
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 1.6e-83 313.2 229 63.3
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.8e-83 312.4 228 64.0
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 3.6e-83 312.0 222 67.6
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.0e-82 310.5 219 65.3
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.4e-82 310.1 230 64.3
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.0e-82 308.5 236 61.4
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 4.0e-82 308.5 236 61.4
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 4.0e-82 308.5 224 62.5
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 5.2e-82 308.1 216 65.3
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 8.9e-82 307.4 216 65.7
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 6.4e-80 301.2 223 61.4
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.1e-79 300.4 224 60.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.4e-79 300.1 224 60.7
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 1.9e-79 299.7 176 77.3
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 5.4e-79 298.1 223 61.0
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 9.2e-79 297.4 223 62.3
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 4.6e-78 295.0 221 61.1
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 6.0e-78 294.7 230 58.7
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.7e-77 293.1 229 59.0
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 5.0e-77 291.6 222 62.2
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 6.6e-77 291.2 221 61.5
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 1.5e-76 290.0 228 59.6
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.5e-76 290.0 222 61.3
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 2.5e-76 289.3 223 58.3
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 4.3e-76 288.5 223 59.6
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 5.6e-76 288.1 229 59.8
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 5.6e-76 288.1 229 59.8
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 5.6e-76 288.1 224 59.4
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 2.1e-75 286.2 228 59.2
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 3.6e-75 285.4 222 59.9
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 3.1e-74 282.3 223 59.6
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 4.0e-74 282.0 227 58.1
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.0e-73 279.6 225 60.0
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 3.4e-73 278.9 218 57.8
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 7.5e-73 277.7 180 70.0
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 9.8e-73 277.3 229 56.3
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 1.7e-72 276.6 218 57.3
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 3.7e-72 275.4 218 56.9
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 3.7e-72 275.4 218 57.3
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 4.9e-72 275.0 218 56.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 4.9e-72 275.0 229 57.6
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 8.3e-72 274.2 218 56.9
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.4e-71 273.5 229 56.3
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 4.1e-71 271.9 218 56.0
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 7.1e-71 271.2 218 56.9
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 3.5e-70 268.9 218 56.4
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 7.8e-70 267.7 230 54.3
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 7.8e-70 267.7 230 54.3
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.0e-69 267.3 218 57.3
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 2.3e-69 266.2 230 53.9
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 2.3e-69 266.2 230 53.9
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 2.3e-69 266.2 231 53.7
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 5.1e-69 265.0 225 56.4
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 6.6e-69 264.6 218 55.5
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.5e-68 263.5 225 53.8
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 9.5e-68 260.8 223 56.1
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.8e-67 259.2 223 55.6
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.1e-66 257.3 229 54.1
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 8.9e-66 254.2 214 57.5
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 4.4e-65 251.9 133 85.0
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 5.8e-65 251.5 226 55.8
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 9.9e-65 250.8 218 56.4
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 3.5e-62 242.3 240 49.6
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.3e-61 240.4 229 51.1
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.0e-61 239.2 180 60.6
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.9e-60 236.5 166 65.1
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 6.2e-59 231.5 227 50.2
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 1.1e-58 230.7 156 65.4
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.4e-58 230.3 132 78.8
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 6.9e-58 228.0 138 76.1
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 8.9e-58 227.6 226 51.8
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 8.9e-58 227.6 127 78.7
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 3.4e-57 225.7 225 49.3
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.2e-56 223.0 128 76.6
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 2.2e-56 223.0 182 57.1
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.8e-56 222.2 180 58.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.9e-55 219.9 321 38.3
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 8.7e-53 211.1 177 53.1
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.3e-51 207.2 163 60.7
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 6.2e-51 204.9 122 73.8
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 8.1e-51 204.5 225 45.8
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 2.6e-49 199.5 218 46.3
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.2e-48 196.4 212 47.2
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 3.3e-44 182.6 182 48.9
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 5.6e-44 181.8 128 66.4
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 3.6e-43 179.1 180 48.9
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 5.1e-37 158.7 128 59.4
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 7.4e-36 154.8 186 45.2
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 5.5e-31 138.7 96 65.6
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.2e-30 137.5 83 71.1
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.9e-24 116.3 172 40.7
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 2.1e-22 110.2 109 46.8
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.1e-18 95.9 127 38.6
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 3.4e-17 92.8 228 29.8
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 4.2e-15 85.9 125 38.4
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 3.0e-13 79.7 43 81.4
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 4.4e-12 75.9 67 59.7
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 1.1e-10 71.2 50 60.0
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.8e-10 70.5 41 65.9
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.2e-08 63.5 118 33.1


User provided reference genes

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