Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.2e-234 816.2 453 100.0
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.2e-166 589.0 436 74.8
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.5e-163 579.3 392 74.2
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 7.4e-163 577.8 455 67.7
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.1e-161 573.9 391 72.9
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.1e-161 572.4 445 65.4
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.5e-160 570.1 395 73.2
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 4.5e-160 568.5 393 73.5
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.3e-159 567.0 393 72.5
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.7e-159 566.6 392 73.7
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.2e-159 566.2 392 74.0
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.4e-158 563.5 393 72.8
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.4e-158 563.5 392 70.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 4.6e-157 558.5 392 71.9
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 6.0e-157 558.1 392 71.7
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.5e-155 553.5 392 72.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 3.7e-154 548.9 396 69.9
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.4e-153 547.0 478 63.0
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 9.0e-153 544.3 391 68.5
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.2e-152 543.9 457 65.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.2e-152 543.9 392 69.4
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 4.5e-152 542.0 392 71.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.8e-152 541.6 392 70.9
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-151 540.4 391 67.8
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-151 540.4 391 67.8
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 1.7e-151 540.0 390 69.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.5e-151 538.1 392 70.4
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.2e-150 535.8 391 67.0
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.2e-150 535.8 389 67.9
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.2e-149 533.9 391 68.3
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 3.5e-149 532.3 391 66.2
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 3.9e-148 528.9 393 67.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.9e-147 526.6 392 68.4
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 9.7e-147 524.2 390 67.2
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.7e-146 522.3 391 65.5
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.1e-145 520.8 392 66.6
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.9e-145 518.1 396 64.6
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.5e-144 516.9 400 66.0
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.9e-143 512.7 395 66.6
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.7e-141 506.1 453 59.2
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 4.6e-141 505.4 396 65.4
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 7.9e-141 504.6 396 66.4
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.0e-140 504.2 393 65.6
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 9.7e-139 497.7 453 58.5
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.3e-138 497.3 391 64.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.4e-137 493.8 391 63.4
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 5.3e-137 491.9 413 60.8
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.0e-136 490.0 396 60.9
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.5e-136 488.8 395 64.3
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 4.5e-136 488.8 442 58.4
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 5.9e-136 488.4 390 61.0
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 5.9e-136 488.4 390 61.3
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 1.7e-135 486.9 395 63.8
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 5.0e-135 485.3 390 64.6
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 8.5e-135 484.6 387 63.6
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.1e-134 484.2 459 59.0
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.9e-134 483.4 452 56.9
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.4e-129 466.5 395 61.5
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.1e-129 466.1 394 61.7
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 3.1e-129 466.1 396 58.8
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.1e-129 466.1 457 58.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.5e-128 463.8 458 57.2
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 4.5e-128 462.2 393 60.1
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 1.3e-127 460.7 392 60.5
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.9e-127 459.5 393 60.1
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.5e-127 458.4 393 60.1
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.9e-126 456.8 394 59.9
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.5e-126 456.4 392 60.5
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.5e-126 456.4 393 59.8
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 3.2e-126 456.1 392 60.2
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.2e-126 455.7 391 60.6
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 7.2e-126 454.9 392 60.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 7.2e-126 454.9 392 60.2
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.4e-126 454.5 391 60.6
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.2e-125 454.1 392 59.4
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.4e-124 450.7 393 60.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.4e-124 450.7 330 67.6
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.8e-124 450.3 458 55.7
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 3.9e-124 449.1 394 59.6
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 6.7e-124 448.4 348 68.1
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.7e-123 445.3 385 58.2
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 6.3e-122 441.8 396 59.1
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.1e-121 439.5 392 58.7
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.6e-120 437.2 398 57.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.0e-120 436.8 394 57.6
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.5e-120 436.0 393 57.0
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.3e-119 434.1 394 57.9
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.8e-119 432.6 394 56.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.5e-119 431.8 395 56.2
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.2e-118 429.5 398 56.8
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 9.4e-118 427.9 394 57.1
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 9.4e-118 427.9 394 57.1
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.6e-117 427.2 390 55.6
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.1e-117 425.2 393 58.3
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.4e-116 424.1 394 56.1
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 4.0e-116 422.5 395 55.7
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 5.7e-115 418.7 398 55.8
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.8e-114 416.4 378 57.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.8e-114 416.4 345 60.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.7e-106 390.6 347 57.3
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.3e-106 388.7 367 56.9
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 7.0e-105 385.2 395 53.2
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 9.1e-105 384.8 398 54.3
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 5.5e-102 375.6 338 62.1
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.2e-101 374.4 340 62.1
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 3.7e-98 362.8 395 51.6
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 2.7e-88 330.1 364 54.9
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.5e-86 324.3 257 64.2
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.5e-83 314.3 416 44.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.7e-82 310.8 331 55.3
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 1.5e-78 297.7 230 65.2
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.3e-74 284.6 393 44.0
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 1.4e-73 281.2 406 42.6
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 3.5e-72 276.6 166 78.3
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.3e-71 273.9 465 43.7
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 9.9e-67 258.5 241 59.8
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.5e-59 234.6 198 58.6
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 4.2e-57 226.5 395 38.0
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.1e-56 224.2 393 36.6
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.5e-56 223.4 402 38.1
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 1.5e-46 191.4 401 33.7
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.2e-27 128.6 110 62.7
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 7.2e-25 119.4 200 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.3e-23 114.4 247 34.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 5.9e-19 99.8 168 38.1
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 7.7e-19 99.4 191 35.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-16 92.0 75 57.3
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.0e-15 87.4 146 36.3
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 5.1e-15 86.7 383 25.6
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.0e-14 84.7 401 25.9
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 1.6e-08 65.1 75 46.7


User provided reference genes

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