Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.9e-204 714.5 444 100.0
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-59 233.4 418 42.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.3e-58 229.2 418 41.6
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 3.8e-47 193.4 412 40.8
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 2.7e-45 187.2 428 39.0
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 6.5e-39 166.0 307 39.1
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 8.5e-39 165.6 363 39.1
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.1e-38 165.2 293 38.9
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.7e-34 150.2 304 33.2
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 4.9e-34 149.8 306 35.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.3e-31 141.0 297 32.3
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 2.9e-31 140.6 233 41.6
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 7.2e-30 136.0 307 34.9
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 1.2e-29 135.2 306 33.7
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.1e-29 134.4 308 33.8
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 4.7e-29 133.3 304 34.9
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 2.3e-28 131.0 305 34.8
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.3e-28 131.0 308 31.8
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.0e-28 130.2 311 33.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.5e-27 128.3 296 34.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.7e-26 124.8 307 33.2
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.2e-26 124.4 308 34.4
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 8.3e-26 122.5 311 33.1
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.2e-25 120.6 306 35.3
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.5e-24 117.1 314 31.5
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.5e-24 117.1 314 34.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 4.6e-24 116.7 308 35.1
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 5.9e-24 116.3 301 33.6
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.8e-24 115.9 304 31.2
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.3e-23 115.2 309 32.7
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 2.3e-23 114.4 330 30.9
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.3e-23 114.4 307 34.9
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 2.9e-23 114.0 307 31.3
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 3.9e-23 113.6 291 31.6
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.0e-23 113.2 303 31.0
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 6.6e-23 112.8 301 34.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.5e-22 111.7 306 33.7
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 1.5e-22 111.7 354 30.2
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 5.6e-22 109.8 304 31.2
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 7.3e-22 109.4 300 33.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.1e-21 107.8 289 33.2
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.8e-21 107.5 291 28.9
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 4.7e-21 106.7 323 33.1
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.2e-21 106.3 297 33.0
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-20 105.1 298 32.2
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.4e-20 105.1 293 31.7
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.2e-20 103.2 305 30.2
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.2e-19 102.1 294 30.3
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.2e-19 102.1 303 32.0
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.5e-19 101.7 306 33.0
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 3.4e-19 100.5 304 32.6
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.4e-19 100.5 295 32.5
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.7e-18 98.2 315 28.3
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-18 98.2 294 34.0
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 3.7e-18 97.1 308 30.5
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 3.7e-18 97.1 302 29.8
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 4.9e-18 96.7 305 33.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-17 95.1 310 29.0
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.4e-17 95.1 298 29.5
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.9e-17 94.7 299 30.8
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.4e-17 94.4 318 34.3
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 9.2e-17 92.4 335 28.1
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 2.0e-16 91.3 304 32.2
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 6.0e-16 89.7 294 29.3
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.3e-15 87.8 289 29.1
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 3.0e-15 87.4 316 28.2
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.0e-15 87.4 289 29.1
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 3.9e-15 87.0 293 28.3
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 5.0e-15 86.7 311 30.2
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 5.0e-15 86.7 316 28.5
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 6.6e-15 86.3 319 28.8
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 8.6e-15 85.9 316 29.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 2.5e-14 84.3 390 25.6
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 4.3e-14 83.6 298 27.5
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.6e-14 83.2 306 29.1
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.6e-14 83.2 303 26.7
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 9.5e-14 82.4 296 29.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 9.5e-14 82.4 285 26.7
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.5e-14 82.4 298 27.9
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 9.5e-14 82.4 294 28.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.2e-13 82.0 314 30.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-13 81.6 288 27.4
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.1e-13 81.3 301 29.9
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 2.1e-13 81.3 321 27.4
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.8e-13 80.9 294 28.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.7e-13 80.1 289 27.3
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 6.2e-13 79.7 309 28.8
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 8.1e-13 79.3 299 29.1
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.3e-12 77.8 297 31.6
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.0e-12 77.0 304 28.3
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 8.9e-12 75.9 140 36.4
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.2e-11 75.5 304 28.0
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.2e-11 75.5 293 27.0
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-11 75.5 291 27.8
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 1.5e-11 75.1 93 46.2
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.0e-11 74.7 290 27.2
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.0e-11 74.7 290 25.2
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.4e-11 73.9 290 27.2
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 7.5e-11 72.8 119 39.5
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 9.8e-11 72.4 295 26.4
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.3e-10 72.0 186 28.5
Cpa.g.sc26.300 Carica papaya HOM05D004095 ORTHO05D003197 2.2e-10 71.2 110 43.6
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 6.4e-10 69.7 323 26.9
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 1.1e-09 68.9 183 41.5
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 1.1e-09 68.9 354 26.3
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 1.1e-09 68.9 76 51.3
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 1.9e-09 68.2 296 26.7
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 2.4e-09 67.8 360 24.7
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 9.2e-09 65.9 304 26.6
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 9.2e-09 65.9 315 28.9
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 2.1e-08 64.7 296 24.7
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 2.7e-08 64.3 95 41.1
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.7e-08 64.3 136 37.5
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 2.7e-08 64.3 82 45.1
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.6e-08 63.5 91 39.6
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 7.8e-08 62.8 112 33.9
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 1.0e-07 62.4 101 33.7
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.3e-07 62.0 91 41.8
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.3e-07 62.0 307 26.1
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 1.7e-07 61.6 90 41.1
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.3e-07 61.2 91 40.7
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 3.0e-07 60.8 318 25.5
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.0e-07 60.8 315 25.4
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 3.0e-07 60.8 316 25.6
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.0e-07 60.8 296 26.7
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 3.9e-07 60.5 93 39.8
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 3.9e-07 60.5 115 32.2
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-07 60.5 214 31.3
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 3.9e-07 60.5 312 27.2
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.9e-07 60.5 300 25.3
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 6.6e-07 59.7 82 36.6
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 8.6e-07 59.3 313 28.1
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 8.6e-07 59.3 197 26.4
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 1.1e-06 58.9 116 32.8
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.1e-06 58.9 292 27.7
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 1.5e-06 58.5 121 35.5
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.9e-06 58.2 294 28.2
MD15G1242200 Malus domestica HOM05D024588 ORTHO05D003197 1.9e-06 58.2 67 52.2
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 1.9e-06 58.2 106 32.1
TPR.G38526 Trifolium pratense HOM05D004095 ORTHO05D003197 2.5e-06 57.8 80 40.0
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 5.6e-06 56.6 299 25.4
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 5.6e-06 56.6 218 25.2
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 5.6e-06 56.6 307 27.7
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 7.3e-06 56.2 161 28.0
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 7.3e-06 56.2 132 34.8
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 7.3e-06 56.2 317 26.8
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 9.5e-06 55.8 218 25.2
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 9.5e-06 55.8 122 30.3
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.5e-06 55.8 297 27.3


User provided reference genes

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