Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.4e-69 264.2 137 100.0
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.4e-56 223.0 137 82.5
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.5e-55 219.5 137 80.3
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.0e-54 216.9 137 78.8
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 2.9e-54 215.3 131 80.9
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 8.4e-54 213.8 140 79.3
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.4e-54 213.8 137 78.8
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.1e-53 213.4 137 74.5
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.4e-53 213.0 137 78.8
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 1.9e-53 212.6 137 77.4
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 9.3e-53 210.3 137 78.8
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.2e-52 209.9 137 76.6
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 1.8e-51 206.1 138 76.8
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.8e-51 206.1 134 78.4
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.0e-51 205.3 137 77.4
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 3.9e-51 204.9 137 75.9
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 5.1e-51 204.5 136 73.5
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 6.7e-51 204.1 135 74.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 8.7e-51 203.8 139 77.7
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 8.7e-51 203.8 138 77.5
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.5e-50 203.0 136 72.1
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.9e-50 202.6 135 73.3
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.9e-50 202.6 138 77.5
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.5e-50 202.2 137 75.9
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.5e-50 202.2 138 75.4
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.3e-50 201.8 141 76.6
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 5.7e-50 201.1 135 73.3
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.4e-50 200.7 139 73.4
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.6e-49 199.5 136 74.3
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.6e-49 199.5 140 75.7
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.7e-49 198.4 137 75.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 4.8e-49 198.0 138 73.9
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 1.1e-48 196.8 138 75.4
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.4e-48 196.4 137 73.0
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.8e-48 196.1 138 75.4
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.4e-48 195.7 137 73.0
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.1e-48 194.9 138 71.0
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 4.1e-48 194.9 131 75.6
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 6.9e-48 194.1 135 71.9
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.2e-47 193.4 140 72.9
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.5e-47 193.0 138 73.9
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-47 193.0 138 73.9
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.5e-47 193.0 138 74.6
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.5e-47 193.0 137 70.8
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.0e-47 192.6 137 70.8
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.4e-47 191.8 138 70.3
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.0e-46 190.3 138 73.2
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.0e-46 190.3 143 72.0
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.3e-46 189.9 138 70.3
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 1.7e-46 189.5 139 69.8
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-46 189.5 138 72.5
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 73.2
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 72.5
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.9e-46 188.7 137 70.1
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.9e-46 188.7 138 73.2
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.9e-46 188.7 137 70.8
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 5.0e-46 188.0 139 74.1
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 6.5e-46 187.6 139 68.3
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 6.5e-46 187.6 139 72.7
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.9e-45 186.0 138 68.8
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 70.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 3.2e-45 185.3 137 67.9
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 4.2e-45 184.9 141 70.9
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 5.5e-45 184.5 169 62.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 7.2e-45 184.1 137 68.6
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 7.2e-45 184.1 137 69.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.1e-44 182.6 140 67.9
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.7e-44 182.2 138 71.0
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.6e-44 181.8 140 67.1
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.6e-44 181.8 137 65.0
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 4.6e-44 181.4 140 66.4
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 4.6e-44 181.4 139 66.9
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 4.6e-44 181.4 137 67.9
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.1e-44 181.0 140 66.4
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.1e-44 181.0 140 67.1
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 7.9e-44 180.6 141 67.4
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 65.0
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 65.0
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 65.0
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 65.0
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.8e-43 179.5 134 68.7
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.3e-43 179.1 138 64.5
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.0e-43 178.7 127 71.7
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 3.0e-43 178.7 137 67.9
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 3.0e-43 178.7 140 66.4
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 3.0e-43 178.7 135 71.1
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.1e-43 177.9 140 67.1
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 5.1e-43 177.9 140 66.4
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 8.8e-43 177.2 140 65.7
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 8.8e-43 177.2 140 67.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.1e-42 176.8 140 63.6
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.1e-42 176.8 140 65.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.0e-42 176.0 140 64.3
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.0e-42 176.0 118 76.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 4.3e-42 174.9 140 65.0
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 4.3e-42 174.9 138 65.2
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 4.3e-42 174.9 137 65.0
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 5.7e-42 174.5 120 75.8
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 9.7e-42 173.7 139 66.9
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 9.7e-42 173.7 140 65.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.7e-41 172.9 141 64.5
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 6.3e-41 171.0 106 77.4
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.1e-40 170.2 139 66.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.1e-40 170.2 137 64.2
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.4e-40 169.9 128 68.0
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 3.1e-40 168.7 139 66.2
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.5e-39 166.4 146 63.0
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 3.4e-39 165.2 138 62.3
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 4.5e-39 164.9 130 65.4
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 5.9e-39 164.5 118 71.2
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 7.7e-39 164.1 103 76.7
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.3e-38 163.3 142 65.5
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.9e-38 162.2 140 64.3
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 5.0e-38 161.4 138 59.4
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 8.5e-38 160.6 106 72.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 1.9e-37 159.5 209 47.4
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 90 82.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.1e-36 156.0 140 57.9
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.1e-36 156.0 88 84.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 2.3e-35 152.5 138 56.5
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.9e-35 151.8 146 57.5
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 1.7e-33 146.4 89 86.5
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 3.1e-32 142.1 107 61.7
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 4.1e-32 141.7 89 75.3
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 6.5e-30 134.4 89 68.5
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 3.2e-29 132.1 144 51.4
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.1e-28 129.4 70 85.7
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.4e-27 126.7 142 56.3
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.8e-27 126.3 109 66.1
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.9e-27 125.2 120 52.5
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 6.7e-27 124.4 101 57.4
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.6e-23 113.2 96 52.1
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.5e-21 105.9 74 70.3
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 5.5e-21 104.8 109 60.6
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 3.6e-20 102.1 88 62.5
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.8e-17 92.4 88 60.2
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.8e-16 89.7 65 67.7
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.1e-12 76.3 71 67.6
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.2e-10 70.5 40 85.0
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 1.1e-08 63.9 37 81.1
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 7.7e-07 57.8 106 31.1
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 2.3e-06 56.2 137 30.7
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 3.8e-06 55.5 113 37.2
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 5.0e-06 55.1 147 34.7
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 6.6e-06 54.7 107 33.6
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 6.6e-06 54.7 107 33.6
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 8.6e-06 54.3 106 31.1
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 8.6e-06 54.3 106 31.1


User provided reference genes

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