Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036745 Camellia sinensis var. sinensis HOM05D009487 ORTHO05D011434 1.9e-236 822.0 388 100.0
Lj9C465T16 Lonicera japonica HOM05D009487 ORTHO05D011434 1.3e-59 234.6 384 40.4
Lj9C465T15 Lonicera japonica HOM05D009487 ORTHO05D011434 1.5e-42 177.9 327 37.6
DCAR_025206 Daucus carota HOM05D009487 ORTHO05D011434 7.2e-34 149.1 386 29.0
Rhsim13G0006900 Rhododendron simsii HOM05D009487 ORTHO05D011434 6.8e-32 142.5 390 30.8
DCAR_005359 Daucus carota HOM05D009487 ORTHO05D011434 1.7e-30 137.9 325 30.2
Hma1.2p1_0071F.1_g037920 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 1.4e-29 134.8 386 29.8
DCAR_025207 Daucus carota HOM05D009487 ORTHO05D011434 3.1e-29 133.7 382 27.5
Nn1g09219 Nelumbo nucifera HOM05D009487 ORTHO05D011434 2.7e-28 130.6 321 32.1
Nn2g13898 Nelumbo nucifera HOM05D009487 ORTHO05D011434 5.9e-28 129.4 332 27.7
TAR371G0718 Trochodendron aralioides HOM05D009487 ORTHO05D011434 1.7e-27 127.9 329 29.5
DCAR_025205 Daucus carota HOM05D000041 ORTHO05D008933 3.8e-27 126.7 373 28.2
Hma1.2p1_0071F.1_g037940 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 8.6e-27 125.6 318 29.2
Aqoxy2G00485 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.5e-26 124.8 389 27.0
Rhsim05G0023100 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.4e-23 113.2 321 27.1
RhsimUnG0144600 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.4e-23 113.2 324 26.9
Aqoxy4G00872 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 3.7e-22 110.2 311 30.9
RhsimUnG0032700 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.9e-22 109.8 338 25.4
Aqoxy2G04013 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 6.3e-22 109.4 320 27.8
RhsimUnG0032500 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.2e-21 107.1 329 25.8
Aqoxy2G04015 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.2e-20 105.1 317 27.4
RhsimUnG0032600 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.2e-20 105.1 197 33.5
Rhsim05G0023000 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.0e-20 104.4 338 26.9
RhsimUnG0144900 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.0e-19 102.1 189 33.3
RhsimUnG0188900 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.7e-19 101.3 189 32.8
RhsimUnG0144700 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.3e-18 96.7 189 31.7
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 5.6e-18 96.3 314 25.8
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.6e-17 94.7 274 27.0
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 1.4e-16 91.7 321 25.9
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.4e-16 91.7 265 26.0
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 1.8e-16 91.3 330 25.5
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 5.2e-16 89.7 327 25.4
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 6.8e-16 89.4 327 25.7
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 6.8e-16 89.4 265 25.3
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 6.8e-16 89.4 319 24.8
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 3.4e-15 87.0 265 25.3
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 4.4e-15 86.7 265 25.7
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 5.8e-15 86.3 304 25.0
Thhalv10002259m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 5.8e-15 86.3 267 26.2
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 5.8e-15 86.3 250 26.8
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 7.5e-15 85.9 323 25.1
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 9.8e-15 85.5 306 24.8
Sp7g03220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.8e-15 85.5 269 26.0
DCAR_025209 Daucus carota HOM05D009487 ORTHO05D011434 1.3e-14 85.1 98 38.8
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 1.3e-14 85.1 325 24.9
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 1.7e-14 84.7 235 26.4
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 3.7e-14 83.6 303 24.4
THA.LOC104816392 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 3.7e-14 83.6 233 27.0
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 6.4e-14 82.8 270 26.3
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 6.4e-14 82.8 304 24.7
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 8.3e-14 82.4 312 23.7
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 8.3e-14 82.4 327 25.1
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.1e-13 82.0 242 28.1
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 1.4e-13 81.6 324 23.1
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.9e-13 81.3 267 27.0
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 1.9e-13 81.3 312 23.7
Rhsim05G0023300 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.2e-13 80.5 107 37.4
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 4.1e-13 80.1 303 24.4
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 4.1e-13 80.1 313 23.3
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 5.4e-13 79.7 242 25.6
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 5.4e-13 79.7 232 25.9
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 5.4e-13 79.7 336 23.5
Rhsim05G0150400 Rhododendron simsii HOM05D009487 ORTHO05D011434 7.0e-13 79.3 270 24.8
Carub.0002s0673 Capsella rubella HOM05D001286 ORTHO05D000440 2.0e-12 77.8 290 25.9
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 2.0e-12 77.8 319 23.2
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 3.5e-12 77.0 311 22.8
QL12p023875 Quercus lobata HOM05D007879 ORTHO05D000440 3.5e-12 77.0 236 26.7
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 4.6e-12 76.6 244 29.5
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 1.3e-11 75.1 236 26.7
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 1.3e-11 75.1 241 24.5
Haze_09881 Corylus avellana HOM05D001286 ORTHO05D000440 1.3e-11 75.1 142 31.7
QL07p015836 Quercus lobata HOM05D007879 ORTHO05D000440 2.3e-11 74.3 236 26.3
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 5.0e-11 73.2 326 21.8
Peaxi162Scf00404g00218 Petunia axillaris HOM05D001286 ORTHO05D000440 5.0e-11 73.2 228 24.6
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 8.6e-11 72.4 238 27.3
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 8.6e-11 72.4 232 24.1
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.1e-10 72.0 304 25.0
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.5e-10 71.6 248 27.8
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 1.5e-10 71.6 252 24.2
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 1.9e-10 71.2 318 23.3
Thecc.03G245200 Theobroma cacao HOM05D000151 ORTHO05D000074 1.9e-10 71.2 294 21.8
Lsat_1_v5_gn_8_77420 Lactuca sativa HOM05D001286 ORTHO05D000440 3.3e-10 70.5 295 24.1
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 4.3e-10 70.1 261 23.4
CARHR094110 Cardamine hirsuta HOM05D001286 ORTHO05D000440 5.6e-10 69.7 316 24.7
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 5.6e-10 69.7 156 29.5
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 5.6e-10 69.7 325 20.6
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 5.6e-10 69.7 237 27.4
Aa31LG2G11120 Aethionema arabicum HOM05D001286 ORTHO05D000440 7.3e-10 69.3 275 25.5
AL5G37800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.2e-09 68.6 229 23.6
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 1.2e-09 68.6 223 23.8
Peaxi162Scf00067g00024 Petunia axillaris HOM05D007879 ORTHO05D000440 1.6e-09 68.2 186 28.5
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 1.6e-09 68.2 247 24.3
Rhsim13G0017600 Rhododendron simsii HOM05D007879 ORTHO05D000440 2.1e-09 67.8 151 28.5
RhsimUnG0188800 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.1e-09 67.8 94 37.2
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 2.1e-09 67.8 242 24.4
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.8e-09 67.4 170 29.4
TAR636G3329 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.8e-09 67.4 170 27.6
CARHR036030 Cardamine hirsuta HOM05D001286 ORTHO05D000440 4.7e-09 66.6 237 28.3
Prupe.8G252000 Prunus persica HOM05D007879 ORTHO05D000440 4.7e-09 66.6 146 31.5
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 4.7e-09 66.6 228 23.2
Dinv32989 Davidia involucrata HOM05D007879 ORTHO05D000440 1.1e-08 65.5 145 31.0
Rhsim08G0205000 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.1e-08 65.5 142 31.0
Thecc.04G160800 Theobroma cacao HOM05D000151 ORTHO05D000074 1.8e-08 64.7 249 23.3
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 2.3e-08 64.3 226 24.3
ATR0851G001 Amborella trichopoda HOM05D001286 ORTHO05D000440 3.1e-08 63.9 144 29.2
Sp5g06085 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.0e-08 63.5 142 28.2
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.0e-08 63.5 287 25.1
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 6.8e-08 62.8 141 30.5
Cfa006040 Carpinus fangiana HOM05D007879 ORTHO05D000440 6.8e-08 62.8 205 24.4
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 8.9e-08 62.4 141 27.7
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 8.9e-08 62.4 141 27.7
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.5e-07 61.6 142 30.3
MD11G1297700 Malus domestica HOM05D007879 ORTHO05D000440 3.4e-07 60.5 208 25.5
Cfa006049 Carpinus fangiana HOM05D007879 ORTHO05D000440 4.4e-07 60.1 199 24.6
Thecc.01G290000 Theobroma cacao HOM05D007879 ORTHO05D000440 4.4e-07 60.1 134 28.4
TWI59G0016 Tripterygium wilfordii HOM05D007879 ORTHO05D000440 4.4e-07 60.1 143 28.7
TWI59G0406 Tripterygium wilfordii HOM05D007879 ORTHO05D000440 4.4e-07 60.1 143 28.7
A09p10830 Brassica napus HOM05D001286 ORTHO05D000440 5.8e-07 59.7 136 27.9
A09p10860 Brassica napus HOM05D001286 ORTHO05D000440 5.8e-07 59.7 136 27.9
AT3G56470 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 7.5e-07 59.3 226 20.8
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 7.5e-07 59.3 136 27.9
RcHm_v2.0_Chr6g0295501 Rosa chinensis HOM05D012067 ORTHO05D015131 7.5e-07 59.3 276 24.6
FvH4_4g05011 Fragaria vesca HOM05D000151 ORTHO05D000074 9.8e-07 58.9 149 29.5
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-06 58.5 144 28.5
Thecc.06G008300 Theobroma cacao HOM05D000151 ORTHO05D000074 1.7e-06 58.2 132 30.3
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 2.2e-06 57.8 151 29.1
CARHR054360 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.2e-06 57.8 124 29.8
Thhalv10028097m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 2.2e-06 57.8 138 31.2
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.2e-06 57.8 142 26.8
Nn1g04037 Nelumbo nucifera HOM05D000151 ORTHO05D000074 2.2e-06 57.8 155 26.5
Thhalv10029532m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 2.9e-06 57.4 108 30.6
RcHm_v2.0_Chr1g0339581 Rosa chinensis HOM05D000151 ORTHO05D000074 2.9e-06 57.4 164 31.1
AT4G12382 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 3.7e-06 57.0 136 27.2
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 3.7e-06 57.0 136 27.2
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 3.7e-06 57.0 136 27.2
Thhalv10027612m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 3.7e-06 57.0 141 31.2
TWI63G1693 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 3.7e-06 57.0 229 25.8
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 4.9e-06 56.6 136 29.4
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 4.9e-06 56.6 136 29.4
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 4.9e-06 56.6 136 29.4
Ciclev10021313m.g Citrus clementina HOM05D007879 ORTHO05D000440 4.9e-06 56.6 135 26.7
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.4e-06 56.2 141 25.5
Thhalv10029466m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 8.3e-06 55.8 138 29.7
PSO210G6800 Papaver somniferum HOM05D001286 ORTHO05D000440 8.3e-06 55.8 190 27.4


User provided reference genes

Program Settings