Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036739 Camellia sinensis var. sinensis HOM05D007597 ORTHO05D009608 1.0e-97 360.1 189 100.0
Actinidia38436 Actinidia chinensis HOM05D007597 ORTHO05D009608 6.2e-47 191.4 174 64.9
CSS0009732 Camellia sinensis var. sinensis HOM05D007597 ORTHO05D009608 3.4e-45 185.7 91 100.0
Rhsim04G0170700 Rhododendron simsii HOM05D007597 ORTHO05D009608 6.4e-44 181.4 197 55.8
vmacro08570 Vaccinium macrocarpon HOM05D007597 ORTHO05D009608 8.4e-44 181.0 175 64.0
Potri.008G135400 Populus trichocarpa HOM05D007597 ORTHO05D009608 3.2e-43 179.1 166 63.9
Dinv07717 Davidia involucrata HOM05D007597 ORTHO05D009608 4.2e-43 178.7 118 78.0
Cfa015029 Carpinus fangiana HOM05D007597 ORTHO05D009608 1.7e-41 173.3 172 57.6
Sabra08G0103400 Salix brachista HOM05D007597 ORTHO05D009608 1.7e-41 173.3 166 62.0
MD13G1019900 Malus domestica HOM05D007597 ORTHO05D009608 3.9e-41 172.2 191 55.0
Duzib251G0764 Durio zibethinus HOM05D007597 ORTHO05D009608 6.6e-41 171.4 134 67.9
GSVIVG01011651001 Vitis vinifera HOM05D007597 ORTHO05D009608 8.7e-41 171.0 170 60.6
Haze_10869 Corylus avellana HOM05D007597 ORTHO05D009608 1.1e-40 170.6 172 57.0
TWI53G0585 Tripterygium wilfordii HOM05D007597 ORTHO05D009608 1.5e-40 170.2 172 60.5
Nn3g20775 Nelumbo nucifera HOM05D007597 ORTHO05D009608 2.5e-40 169.5 138 65.9
Aqoxy1G03694 Aquilegia oxysepala HOM05D007597 ORTHO05D009608 3.3e-40 169.1 119 68.9
Cc11_g07700 Coffea canephora HOM05D007597 ORTHO05D009608 1.6e-39 166.8 189 54.5
Peaxi162Scf00937g00322 Petunia axillaris HOM05D007597 ORTHO05D009608 3.6e-39 165.6 173 55.5
CiPaw.06G052900 Carya illinoinensis HOM05D007597 ORTHO05D009608 8.1e-39 164.5 150 62.0
Atru.chr11.909 Acer truncatum HOM05D007597 ORTHO05D009608 4.0e-38 162.2 152 61.2
AUR62037405 Chenopodium quinoa HOM05D007597 ORTHO05D009608 5.3e-38 161.8 116 71.6
Gohir.D04G186400 Gossypium hirsutum HOM05D007597 ORTHO05D009608 9.0e-38 161.0 172 55.2
Prupe.1G334100 Prunus persica HOM05D007597 ORTHO05D009608 9.0e-38 161.0 99 77.8
Gorai.012G182800 Gossypium raimondii HOM05D007597 ORTHO05D009608 2.0e-37 159.8 172 56.4
EL10Ac1g02363 Beta vulgaris HOM05D007597 ORTHO05D009608 2.6e-37 159.5 125 67.2
FAN22G0955 Fragaria x ananassa HOM05D007597 ORTHO05D009608 2.6e-37 159.5 124 71.8
AUR62034992 Chenopodium quinoa HOM05D007597 ORTHO05D009608 4.4e-37 158.7 113 70.8
FvH4_4g33480 Fragaria vesca HOM05D007597 ORTHO05D009608 4.4e-37 158.7 124 71.0
FAN12G3867 Fragaria x ananassa HOM05D007597 ORTHO05D009608 4.4e-37 158.7 124 68.5
Gohir.A04G143100 Gossypium hirsutum HOM05D007597 ORTHO05D009608 4.4e-37 158.7 170 55.9
QL93p0203_0030 Quercus lobata HOM05D007597 ORTHO05D009608 5.8e-37 158.3 164 59.1
FAN17G0527 Fragaria x ananassa HOM05D007597 ORTHO05D009608 1.7e-36 156.8 124 70.2
Phvul.003G017900 Phaseolus vulgaris HOM05D007597 ORTHO05D009608 1.7e-36 156.8 167 52.7
RcHm_v2.0_Chr4g0442791 Rosa chinensis HOM05D007597 ORTHO05D009608 1.7e-36 156.8 127 70.1
Thecc.02G293900 Theobroma cacao HOM05D007597 ORTHO05D009608 2.2e-36 156.4 100 75.0
VMungo1215G2214 Vigna mungo HOM05D007597 ORTHO05D009608 3.8e-36 155.6 161 53.4
Lalb_Chr10g0095671 Lupinus albus HOM05D007597 ORTHO05D009608 4.9e-36 155.2 155 54.2
Ciclev10016899m.g Citrus clementina HOM05D007597 ORTHO05D009608 1.1e-35 154.1 174 51.7
Lj2g0017292 Lotus japonicus HOM05D007597 ORTHO05D009608 1.1e-35 154.1 164 53.0
CANSAT01G1232 Cannabis sativa HOM05D007597 ORTHO05D009608 1.4e-35 153.7 163 57.1
PSO478G0215 Papaver somniferum HOM05D007597 ORTHO05D009608 1.4e-35 153.7 189 48.7
PSO017G5208 Papaver somniferum HOM05D007597 ORTHO05D009608 3.2e-35 152.5 171 51.5
ClCG07G005520 Citrullus lanatus HOM05D007597 ORTHO05D009608 7.1e-35 151.4 114 69.3
Cpa.g.sc2.188 Carica papaya HOM05D007597 ORTHO05D009608 9.3e-35 151.0 135 63.0
Psat6g046800 Pisum sativum HOM05D007597 ORTHO05D009608 9.3e-35 151.0 122 69.7
Eucgr.G02097 Eucalyptus grandis HOM05D007597 ORTHO05D009608 6.0e-34 148.3 126 65.1
HanXRQChr17g0550621 Helianthus annuus HOM05D007597 ORTHO05D009608 1.3e-33 147.1 163 52.1
arahy.Tifrunner.gnm1.ann1.80S20J Arachis hypogaea HOM05D007597 ORTHO05D009608 1.7e-33 146.7 127 62.2
Medtr1g032560 Medicago truncatula HOM05D007597 ORTHO05D009608 1.7e-33 146.7 149 55.7
THA.LOC104824124 Tarenaya hassleriana HOM05D007597 ORTHO05D009608 1.7e-33 146.7 130 58.5
Glyma.02G085800 Glycine max HOM05D007597 ORTHO05D009608 2.3e-33 146.4 181 48.6
arahy.Tifrunner.gnm1.ann1.FU0M5P Arachis hypogaea HOM05D007597 ORTHO05D009608 3.9e-33 145.6 127 61.4
MSTRG.13629 Avicennia marina HOM05D007597 ORTHO05D009608 3.9e-33 145.6 134 55.2
PGR142G2235 Punica granatum HOM05D007597 ORTHO05D009608 3.9e-33 145.6 217 46.1
TPR.G36945 Trifolium pratense HOM05D007597 ORTHO05D009608 6.6e-33 144.8 125 61.6
ECA246G4875 Erigeron canadensis HOM05D007597 ORTHO05D009608 1.5e-32 143.7 118 65.3
Thhalv10004999m.g Eutrema salsugineum HOM05D007597 ORTHO05D009608 3.3e-32 142.5 119 59.7
PGSC0003DMG400026859 Solanum tuberosum HOM05D007597 ORTHO05D009608 7.3e-32 141.4 93 74.2
DCAR_030495 Daucus carota HOM05D007597 ORTHO05D009608 1.6e-31 140.2 113 61.1
Oeu031613.1 Olea europaea HOM05D007597 ORTHO05D009608 2.1e-31 139.8 91 70.3
Solyc03g006540.3 Solanum lycopersicum HOM05D007597 ORTHO05D009608 2.1e-31 139.8 93 73.1
Lj6P736T27 Lonicera japonica HOM05D007597 ORTHO05D009608 6.2e-31 138.3 87 71.3
Lsat_1_v5_gn_1_105200 Lactuca sativa HOM05D007597 ORTHO05D009608 8.1e-31 137.9 167 51.5
SalBow2G2924 Salvia bowleyana HOM05D007597 ORTHO05D009608 1.1e-30 137.5 121 58.7
Sp2g13210 Schrenkiella parvula HOM05D007597 ORTHO05D009608 1.1e-30 137.5 118 60.2
Zm00001eb216220 Zea mays HOM05D007597 ORTHO05D009608 3.1e-30 136.0 114 57.0
A06p44080 Brassica napus HOM05D007597 ORTHO05D009608 5.3e-30 135.2 115 59.1
BraA06t27282Z Brassica rapa HOM05D007597 ORTHO05D009608 5.3e-30 135.2 115 59.1
Migut.E00488 Erythranthe guttata HOM05D007597 ORTHO05D009608 6.9e-30 134.8 101 68.3
Os03g0713200 Oryza sativa ssp. japonica HOM05D007597 ORTHO05D009608 9.0e-30 134.4 97 62.9
C07p32430 Brassica napus HOM05D007597 ORTHO05D009608 1.2e-29 134.0 115 59.1
BcaC06g34122 Brassica carinata HOM05D007597 ORTHO05D009608 1.5e-29 133.7 115 59.1
BolC7t43776H Brassica oleracea HOM05D007597 ORTHO05D009608 1.5e-29 133.7 115 59.1
CARHR144330 Cardamine hirsuta HOM05D007597 ORTHO05D009608 2.0e-29 133.3 115 56.5
BcaC06g31279 Brassica carinata HOM05D007597 ORTHO05D009608 3.4e-29 132.5 116 58.6
AT2G01755 Arabidopsis thaliana HOM05D007597 ORTHO05D009608 4.5e-29 132.1 120 57.5
MELO3C016661.2 Cucumis melo HOM05D007597 ORTHO05D009608 5.8e-29 131.7 107 68.2
ATR0118G012 Amborella trichopoda HOM05D007597 ORTHO05D009608 9.9e-29 131.0 97 68.0
Aa31LG2G8130 Aethionema arabicum HOM05D007597 ORTHO05D009608 2.9e-28 129.4 119 54.6
AL5G10880 Arabidopsis lyrata HOM05D007597 ORTHO05D009608 3.8e-28 129.0 119 54.6
Sopen03g002540 Solanum pennellii HOM05D007597 ORTHO05D009608 1.4e-27 127.1 80 76.2
Carub.0005s0071 Capsella rubella HOM05D007597 ORTHO05D009608 1.2e-26 124.0 91 64.8
COL.COLO4_16605 Corchorus olitorius HOM05D007597 ORTHO05D009608 1.2e-21 107.5 61 78.7
AagrBONN_evm.TU.Sc2ySwM_228.3100 Anthoceros agrestis HOM05D007597 ORTHO05D009608 9.9e-21 104.4 93 51.6
CBR_g61471 Chara braunii HOM05D007597 ORTHO05D009608 1.2e-18 97.4 113 46.0
Sed0011475 Sechium edule HOM05D007597 ORTHO05D009608 4.6e-18 95.5 109 58.7
Pp3c16_25200 Physcomitrium patens HOM05D007597 ORTHO05D009608 1.8e-14 83.6 179 33.5
SMO115G0274 Selaginella moellendorffii HOM05D007597 ORTHO05D009608 3.2e-11 72.8 89 44.9
TAR371G0144 Trochodendron aralioides HOM05D007597 ORTHO05D009608 1.2e-10 70.9 114 54.4
Nitab4.5_0006778g0040 Nicotiana tabacum HOM05D007597 ORTHO05D009608 3.0e-09 66.2 66 66.7
QL03p036112 Quercus lobata HOM05D007597 ORTHO05D009608 6.7e-09 65.1 114 46.5
Nitab4.5_0000241g0020 Nicotiana tabacum HOM05D007597 ORTHO05D009608 9.7e-08 61.2 50 68.0
FAN07G1480 Fragaria x ananassa HOM05D007597 ORTHO05D009608 2.8e-07 59.7 68 66.2
FAN07G2660 Fragaria x ananassa HOM05D007597 ORTHO05D009608 2.8e-07 59.7 68 66.2
Manes.17G084450 Manihot esculenta HOM05D007597 ORTHO05D000073 6.3e-07 58.5 79 53.2


User provided reference genes

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