Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010723 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 6.1e-67 257.3 126 100.0
CSS0036734 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 6.1e-67 257.3 126 100.0
CSS0017920 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.7e-64 249.2 126 96.8
CSS0024369 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.7e-62 241.9 126 92.9
CSS0046174 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.6e-51 206.1 107 94.4
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 3.0e-37 158.7 123 66.7
Dinv41384 Davidia involucrata HOM05D000344 ORTHO05D005296 3.3e-36 155.2 125 66.4
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 3.3e-36 155.2 131 67.2
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 3.7e-32 141.7 111 67.6
GSVIVG01001912001 Vitis vinifera HOM05D000344 ORTHO05D005296 4.9e-32 141.4 125 60.8
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.9e-31 139.4 126 60.3
Hma1.2p1_0222F.1_g093480 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 5.4e-31 137.9 125 60.8
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 3.0e-29 132.1 129 58.9
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 8.6e-29 130.6 127 59.8
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 1.1e-28 130.2 100 70.0
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 1.5e-28 129.8 115 60.9
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 3.6e-27 125.2 125 56.8
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 8.1e-27 124.0 129 56.6
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 4.0e-26 121.7 104 61.5
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 4.0e-26 121.7 97 62.9
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 6.8e-26 120.9 93 63.4
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 6.8e-26 120.9 110 60.9
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 8.9e-26 120.6 93 62.4
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 1.5e-25 119.8 113 57.5
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.5e-25 119.8 113 57.5
TAR636G0133 Trochodendron aralioides HOM05D000344 ORTHO05D005296 2.0e-25 119.4 125 56.8
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 4.4e-25 118.2 100 62.0
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 1.3e-24 116.7 121 52.9
Lj9A682T45 Lonicera japonica HOM05D000344 ORTHO05D014129 1.3e-24 116.7 117 57.3
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 2.2e-24 115.9 108 59.3
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 3.8e-24 115.2 94 61.7
Glyma.02G203500 Glycine max HOM05D000344 ORTHO05D005296 8.4e-24 114.0 123 54.5
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 1.1e-23 113.6 127 53.5
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 1.9e-23 112.8 124 49.2
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 3.2e-23 112.1 122 54.1
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 3.2e-23 112.1 124 52.4
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 3.2e-23 112.1 125 52.0
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.2e-23 112.1 125 55.2
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 4.2e-23 111.7 100 56.0
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 5.4e-23 111.3 95 62.1
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 5.4e-23 111.3 93 58.1
Cpa.g.sc46.148 Carica papaya HOM05D000344 ORTHO05D005296 1.2e-22 110.2 100 59.0
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.2e-22 110.2 111 52.3
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 1.6e-22 109.8 100 55.0
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 1.6e-22 109.8 115 57.4
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 2.1e-22 109.4 111 52.3
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 2.7e-22 109.0 106 60.4
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 2.7e-22 109.0 126 48.4
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 6.0e-22 107.8 125 48.8
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 6.0e-22 107.8 100 55.0
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 6.0e-22 107.8 124 47.6
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 7.8e-22 107.5 111 51.4
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 7.8e-22 107.5 116 50.9
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 7.8e-22 107.5 122 51.6
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 1.0e-21 107.1 100 54.0
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.3e-21 106.7 122 54.1
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 2.3e-21 105.9 94 60.6
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 2.3e-21 105.9 123 49.6
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 2.3e-21 105.9 99 54.5
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 2.3e-21 105.9 116 50.9
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 3.0e-21 105.5 116 49.1
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 3.0e-21 105.5 98 55.1
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 3.9e-21 105.1 114 55.3
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 5.1e-21 104.8 100 54.0
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 5.1e-21 104.8 100 54.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 5.1e-21 104.8 122 52.5
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 8.7e-21 104.0 96 54.2
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 1.1e-20 103.6 95 61.1
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 1.1e-20 103.6 99 55.6
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 1.9e-20 102.8 105 54.3
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 4.3e-20 101.7 96 58.3
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 5.6e-20 101.3 113 54.0
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 9.6e-20 100.5 104 52.9
Hund12031 Selenicereus undatus HOM05D000344 ORTHO05D005296 9.6e-20 100.5 93 59.1
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 9.6e-20 100.5 117 51.3
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 1.3e-19 100.1 110 49.1
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 1.3e-19 100.1 110 55.5
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 1.6e-19 99.8 110 50.9
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 1.6e-19 99.8 100 54.0
Haze_19214 Corylus avellana HOM05D000344 ORTHO05D014129 1.6e-19 99.8 100 56.0
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.6e-19 99.8 98 53.1
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 2.1e-19 99.4 104 53.8
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 2.8e-19 99.0 120 49.2
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.8e-19 99.0 102 54.9
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 3.6e-19 98.6 119 50.4
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 6.2e-19 97.8 96 55.2
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.1e-19 97.4 94 55.3
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.1e-19 97.4 94 55.3
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 8.1e-19 97.4 94 55.3
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 8.1e-19 97.4 112 52.7
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.4e-18 96.7 100 54.0
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 1.8e-18 96.3 116 49.1
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 1.8e-18 96.3 113 53.1
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 6.9e-18 94.4 94 54.3
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 6.9e-18 94.4 94 54.3
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 9.0e-18 94.0 105 50.5
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 9.0e-18 94.0 110 51.8
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 1.2e-17 93.6 115 45.2
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 2.0e-17 92.8 103 47.6
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 2.6e-17 92.4 104 49.0
HPP92_010385 Vanilla planifolia HOM05D000344 ORTHO05D005296 5.8e-17 91.3 109 45.9
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.3e-16 90.1 123 47.2
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.3e-16 90.1 123 46.3
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 2.2e-16 89.4 107 47.7
BcaNung07256 Brassica carinata HOM05D000344 ORTHO05D005296 2.2e-16 89.4 107 47.7
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.4e-15 86.7 100 48.0
Hma1.2p1_0028F.1_g017520 Hydrangea macrophylla HOM05D000344 ORTHO05D014129 1.4e-15 86.7 102 52.0
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 1.4e-15 86.7 98 53.1
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 3.2e-15 85.5 100 47.0
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 3.2e-15 85.5 98 53.1
Actinidia38329 Actinidia chinensis HOM05D000344 ORTHO05D005296 7.1e-15 84.3 42 90.5
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 9.3e-15 84.0 114 44.7
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 9.3e-15 84.0 114 47.4
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 9.3e-15 84.0 100 47.0
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 1.2e-14 83.6 100 48.0
SHI02821 Sapria himalayana HOM05D000344 ORTHO05D005296 3.5e-14 82.0 97 47.4
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 1.0e-13 80.5 100 51.0
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 3.9e-13 78.6 105 43.8
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 6.6e-13 77.8 99 44.4
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 1.5e-12 76.6 106 47.2
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 5.6e-12 74.7 97 46.4
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 3.6e-11 72.0 128 40.6
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 1.1e-10 70.5 95 45.3
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 4.0e-10 68.6 75 50.7
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 4.0e-10 68.6 96 43.8
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 4.5e-09 65.1 122 41.0
BcaB05g22391 Brassica carinata HOM05D000344 ORTHO05D014129 5.8e-09 64.7 70 51.4
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 5.8e-09 64.7 70 51.4
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 5.8e-09 64.7 70 51.4
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 5.8e-09 64.7 70 51.4
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 1.3e-08 63.5 71 50.7
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 8.4e-08 60.8 74 43.2
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 1.4e-07 60.1 119 39.5
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 1.4e-07 60.1 100 39.0
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 1.2e-06 57.0 100 40.0


User provided reference genes

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