Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 0.0e+00 1237.6 726 100.0
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 8.1e-305 1050.0 714 90.9
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.2e-212 743.8 721 67.3
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 5.1e-190 668.7 726 61.6
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.1e-189 667.5 686 60.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 8.1e-188 661.4 722 59.8
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.0e-182 644.4 696 61.5
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.0e-182 644.4 696 61.5
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.8e-180 636.3 711 56.7
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.8e-180 636.3 659 63.4
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 3.6e-180 636.0 701 62.8
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.2e-180 635.2 705 58.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.5e-178 629.0 690 57.2
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 6.4e-177 625.2 710 61.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 8.4e-177 624.8 695 59.9
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.4e-176 624.0 700 59.9
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-176 624.0 700 62.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 3.2e-176 622.9 700 59.1
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.1e-175 620.2 697 60.0
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.5e-175 619.4 697 61.5
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 7.9e-175 618.2 711 53.9
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 8.7e-174 614.8 727 59.7
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 9.6e-173 611.3 709 57.1
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.4e-171 607.4 716 55.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 4.0e-171 605.9 535 64.3
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 4.0e-171 605.9 770 56.5
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 5.3e-171 605.5 713 62.4
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.6e-170 603.2 738 56.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.0e-169 601.3 724 56.2
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.3e-169 600.9 715 58.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.5e-168 596.7 734 56.5
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 3.5e-167 592.8 757 54.3
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.0e-166 591.3 713 58.1
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.1e-165 587.8 716 55.9
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.5e-165 587.4 710 54.8
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.9e-165 587.0 759 56.7
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.3e-164 584.3 731 56.6
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.1e-163 579.3 659 60.7
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.1e-160 571.2 724 57.7
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.1e-160 571.2 711 56.7
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 3.6e-159 566.2 660 57.9
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.3e-158 563.5 719 53.5
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.1e-157 561.2 659 55.1
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 9.7e-157 558.1 704 58.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.6e-156 557.4 521 61.0
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.8e-153 546.2 714 51.3
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.6e-151 540.8 712 52.9
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 3.0e-150 536.6 732 52.0
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 4.4e-149 532.7 708 53.5
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.1e-147 528.1 651 58.5
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 2.9e-145 520.0 681 51.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.9e-144 517.3 712 55.3
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.9e-144 517.3 686 56.1
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 6.1e-143 512.3 688 53.3
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.0e-142 511.5 754 53.1
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.8e-142 510.8 744 50.8
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 3.7e-140 503.1 748 48.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 8.2e-140 501.9 667 54.9
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.4e-139 501.1 653 56.5
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.2e-138 498.0 687 51.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 3.8e-137 493.0 691 53.5
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 3.8e-137 493.0 707 54.3
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.1e-136 491.5 697 50.9
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.9e-136 490.7 671 54.7
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.5e-136 490.3 689 49.1
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 3.6e-135 486.5 752 49.9
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 4.0e-134 483.0 692 49.4
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 8.8e-134 481.9 693 53.4
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.7e-132 477.6 720 49.7
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.7e-132 477.6 682 47.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 3.7e-132 476.5 696 49.3
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 3.1e-131 473.4 677 51.6
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 7.7e-130 468.8 673 50.2
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.3e-129 468.0 503 55.1
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.4e-126 458.0 510 53.5
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 2.0e-125 454.1 692 48.0
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 5.7e-125 452.6 299 79.9
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.2e-124 450.7 523 53.3
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 3.7e-124 449.9 520 53.8
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 4.5e-122 443.0 663 48.4
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 5.0e-121 439.5 668 50.4
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 7.2e-120 435.6 726 43.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 9.5e-120 435.3 437 61.1
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.5e-117 427.9 699 46.9
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.0e-117 427.6 734 46.3
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.8e-115 421.0 721 45.5
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.1e-111 407.5 692 45.7
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 5.2e-110 402.9 523 49.5
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 3.4e-109 400.2 698 47.9
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 4.4e-109 399.8 696 45.0
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 9.8e-109 398.7 633 43.1
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 7.8e-106 389.0 695 46.2
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 3.3e-104 383.6 676 44.5
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 9.5e-104 382.1 661 44.3
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.8e-102 377.9 684 44.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.4e-101 373.6 696 43.8
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 4.9e-100 369.8 702 45.9
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-99 368.2 369 62.3
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.7e-98 364.0 681 45.2
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-94 352.1 480 50.0
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.8e-94 351.3 534 44.6
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.0e-93 347.8 704 39.9
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.6e-93 347.4 695 43.6
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.9e-88 331.3 625 41.4
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.2e-87 328.6 391 55.5
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.4e-86 325.1 433 47.6
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.3e-81 308.5 554 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.0e-81 307.4 708 38.0
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.2e-76 291.2 229 69.9
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 6.4e-68 263.1 562 34.9
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 6.2e-63 246.5 340 58.5
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 6.4e-60 236.5 200 58.5
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.2e-58 232.3 512 37.1
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 3.5e-58 230.7 689 32.9
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.0e-53 214.9 263 54.8
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.4e-53 214.2 196 55.1
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 6.5e-52 209.9 264 52.3
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.0e-45 188.3 769 28.6
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.7e-42 177.9 256 49.6
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.3e-41 174.9 756 27.1
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.3e-41 174.9 246 50.8
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 3.0e-41 174.5 427 38.2
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.7e-39 168.7 287 42.2
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.6e-37 161.4 207 46.4
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 4.7e-34 150.6 118 69.5
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.0e-29 135.2 99 73.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 5.9e-29 133.7 270 40.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 7.2e-27 126.7 170 47.6
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.8e-25 122.1 111 53.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 4.8e-23 114.0 183 43.2
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.8e-22 112.1 122 55.7
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.3e-20 105.9 99 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.5e-20 103.2 318 32.7
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.2e-19 100.9 206 38.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.2e-16 92.8 160 40.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.7e-15 87.8 90 48.9
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 4.8e-15 87.4 283 28.3
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.6e-13 82.4 197 39.1
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.1e-10 72.0 104 45.2
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 4.7e-10 70.9 60 56.7
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 8.0e-10 70.1 206 31.1
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.0e-09 69.7 48 62.5
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.8e-09 68.9 111 58.6
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 2.6e-08 65.1 87 50.6
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.2e-07 62.0 99 46.5
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.7e-07 61.2 70 47.1
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 8.3e-07 60.1 70 47.1
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.4e-06 58.5 72 41.7
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.4e-06 58.5 72 41.7
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 3.1e-06 58.2 78 39.7


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