Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.8e-157 558.5 276 100.0
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.8e-149 531.2 269 98.1
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-134 483.0 254 94.5
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-134 483.0 254 94.5
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.1e-121 440.3 254 85.4
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.2e-111 404.8 253 79.8
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-101 372.5 243 75.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.2e-100 369.0 253 74.7
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 3.6e-96 355.5 250 70.4
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 8.1e-96 354.4 245 71.4
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.1e-95 354.0 253 70.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.4e-95 353.6 252 69.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.0e-95 352.1 252 69.4
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.9e-95 350.9 247 69.2
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.2e-94 350.5 252 67.9
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.5e-94 350.1 248 69.0
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.0e-94 349.7 245 69.8
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 5.8e-94 348.2 254 66.5
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 7.5e-94 347.8 252 69.0
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 9.9e-94 347.4 254 66.1
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.7e-93 345.5 249 67.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 6.4e-93 344.7 247 67.2
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 8.3e-93 344.4 248 69.4
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.2e-92 342.4 246 71.5
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 3.2e-92 342.4 246 71.5
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.2e-92 342.4 248 67.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 3.2e-92 342.4 252 67.9
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.7e-91 339.3 241 67.6
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.5e-91 339.0 252 67.1
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 6.0e-91 338.2 240 70.8
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 7.8e-91 337.8 252 67.1
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 7.8e-91 337.8 252 67.5
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.0e-90 337.4 257 64.2
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 3.0e-90 335.9 248 67.3
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 3.9e-90 335.5 252 67.9
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.1e-90 335.1 250 66.0
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 5.1e-90 335.1 252 66.7
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.6e-90 334.7 250 66.4
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 8.6e-90 334.3 251 65.3
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.5e-89 333.6 246 69.1
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.5e-89 333.6 250 66.4
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.9e-89 333.2 241 66.4
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.5e-89 332.8 252 65.1
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 2.5e-89 332.8 248 67.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 7.3e-89 331.3 238 69.3
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.2e-88 330.5 238 66.8
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.2e-88 330.5 253 66.8
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.6e-88 330.1 246 66.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 3.6e-88 328.9 256 65.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 4.7e-88 328.6 248 66.1
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.2e-88 328.2 251 63.7
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 6.2e-88 328.2 252 64.3
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 6.2e-88 328.2 252 64.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 8.1e-88 327.8 251 65.3
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.1e-87 327.4 247 66.0
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.4e-87 327.0 250 64.8
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.4e-87 327.0 241 64.3
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.8e-87 326.6 250 65.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-87 326.2 250 65.6
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 2.4e-87 326.2 250 66.0
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.4e-87 326.2 252 64.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.4e-87 326.2 252 64.7
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 2.4e-87 326.2 252 65.5
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 3.1e-87 325.9 250 66.0
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.0e-87 325.5 237 67.1
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 5.2e-87 325.1 250 64.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 5.2e-87 325.1 250 64.8
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 8.9e-87 324.3 291 59.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-86 323.9 252 65.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.2e-86 323.9 237 67.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.2e-86 323.9 239 66.9
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.2e-86 323.9 247 65.2
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.7e-85 320.1 242 65.7
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.2e-85 319.7 239 64.4
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.9e-85 319.3 238 65.5
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.1e-84 317.4 252 65.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.4e-84 317.0 242 64.5
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.1e-84 315.5 250 61.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 5.4e-84 315.1 284 57.0
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 9.2e-84 314.3 248 62.9
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 1.6e-83 313.5 250 61.2
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.5e-83 312.4 250 60.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.0e-83 311.6 250 60.8
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.3e-82 310.5 244 63.5
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 3.0e-82 309.3 249 61.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.1e-81 307.4 291 56.7
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.5e-81 306.2 235 65.5
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-81 306.2 244 61.5
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 2.1e-80 303.1 199 72.9
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.8e-80 302.8 241 62.2
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.8e-80 302.8 253 60.1
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.4e-79 300.4 253 62.1
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 6.9e-79 298.1 252 61.1
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.3e-77 293.9 260 57.3
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.7e-75 286.2 247 59.1
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 4.9e-69 265.4 244 55.3
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 8.4e-69 264.6 245 56.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.6e-67 260.4 198 65.2
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.5e-65 253.8 203 62.6
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.0e-63 244.6 147 81.6
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.2e-62 244.2 198 61.1
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.6e-62 243.0 147 81.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 8.4e-61 238.0 206 55.8
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 4.6e-59 232.3 179 64.8
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.1e-57 227.6 191 61.3
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 9.6e-57 224.6 210 57.1
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 6.2e-56 221.9 176 61.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 4.0e-55 219.2 151 74.8
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 6.9e-55 218.4 197 53.8
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 8.4e-53 211.5 236 48.7
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 2.1e-51 206.8 134 70.9
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.0e-51 205.3 113 84.1
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.0e-50 204.5 141 67.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 5.7e-49 198.7 249 47.0
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 4.1e-47 192.6 166 62.0
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 2.9e-45 186.4 188 53.2
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.5e-44 183.3 150 64.0
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 3.2e-44 183.0 111 78.4
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 5.5e-44 182.2 157 61.1
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.9e-42 176.0 150 58.0
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 8.2e-40 168.3 151 60.3
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-39 167.9 151 59.6
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-39 166.4 149 60.4
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.3e-37 161.0 192 49.0
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 6.5e-37 158.7 98 72.4
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 7.4e-33 145.2 128 64.8
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.6e-30 136.7 110 55.5
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-26 124.0 109 54.1
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-23 114.8 180 43.3
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.2e-19 101.3 194 34.5
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 5.2e-18 95.9 191 35.6
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 5.7e-17 92.4 113 44.2
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 8.3e-16 88.6 220 31.4
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.5e-13 79.0 47 76.6
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 6.5e-13 79.0 85 45.9
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-11 73.6 118 44.9
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 5.7e-09 65.9 77 42.9
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.2e-08 63.9 75 41.3
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-08 62.4 63 49.2
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-08 62.4 136 33.1
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-06 57.0 77 40.3


User provided reference genes

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