Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 8.9e-165 583.6 302 100.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.2e-129 466.8 307 81.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.8e-128 463.0 314 77.4
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.9e-128 461.8 313 76.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-125 453.0 324 76.9
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.8e-125 453.0 324 76.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 9.4e-122 440.7 306 74.5
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.5e-114 416.0 254 81.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.7e-113 411.8 313 70.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 5.1e-112 408.3 302 69.9
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.0e-111 406.4 309 68.6
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.6e-111 406.0 314 68.8
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.3e-111 405.6 310 70.6
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 9.7e-111 404.1 309 69.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.2e-110 402.9 304 70.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.8e-110 401.7 278 72.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 4.8e-110 401.7 324 66.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.1e-109 400.6 279 74.6
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.8e-109 399.8 274 73.7
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.4e-109 399.4 279 72.8
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.2e-108 397.1 255 77.6
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.6e-108 396.0 311 67.5
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.5e-108 395.2 301 68.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-108 394.8 307 65.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.9e-108 394.8 300 70.0
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.0e-107 394.0 275 73.5
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.3e-107 393.7 306 67.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.2e-107 392.9 314 66.6
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 3.8e-107 392.1 308 68.5
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.8e-107 392.1 329 66.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.9e-106 389.8 266 73.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.9e-106 389.8 256 75.8
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 3.2e-106 389.0 301 69.1
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.2e-106 389.0 308 67.2
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 9.4e-106 387.5 306 67.3
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 9.4e-106 387.5 306 67.3
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.6e-105 386.7 303 67.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.6e-105 386.7 302 65.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 4.7e-105 385.2 304 67.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 6.1e-105 384.8 304 67.4
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 8.0e-105 384.4 291 66.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.4e-104 383.6 300 67.3
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.4e-104 383.6 274 71.5
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.8e-104 383.3 256 75.4
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 2.3e-104 382.9 256 73.8
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.3e-104 382.9 249 75.1
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.0e-104 382.5 315 63.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.0e-104 382.5 306 66.7
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 6.7e-104 381.3 306 66.7
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 8.8e-104 380.9 310 64.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 8.8e-104 380.9 273 70.3
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.1e-103 380.6 304 65.1
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.0e-103 379.8 301 67.1
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.0e-103 379.8 302 66.6
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.0e-103 379.8 306 66.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.0e-103 379.8 298 67.4
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.7e-103 378.3 258 74.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-102 376.7 307 65.8
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.8e-102 375.9 254 73.6
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.7e-102 375.6 253 74.3
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.3e-102 374.8 249 73.9
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.1e-101 372.1 297 65.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 7.0e-101 371.3 256 71.5
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.6e-100 370.2 306 64.4
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.5e-100 369.0 287 65.9
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-99 367.5 264 77.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.0e-99 367.5 262 72.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.7e-99 366.7 272 69.5
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.7e-99 366.7 236 77.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.9e-99 365.9 310 62.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 5.0e-99 365.2 302 62.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.5e-98 362.8 312 61.9
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.5e-98 362.8 308 63.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 4.7e-97 358.6 307 63.2
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 8.0e-97 357.8 299 62.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 8.0e-97 357.8 256 68.8
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.4e-96 357.1 236 72.5
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.8e-96 356.7 258 70.5
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 6.8e-96 354.8 256 68.0
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.6e-95 352.8 256 66.8
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 3.4e-95 352.4 251 67.3
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 5.7e-95 351.7 249 67.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 5.7e-95 351.7 249 67.5
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.7e-95 351.7 362 54.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.7e-95 351.7 313 61.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 7.5e-95 351.3 254 66.5
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.5e-95 351.3 256 67.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.7e-94 350.1 236 72.9
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-94 349.7 251 66.9
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.2e-94 349.7 318 60.7
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.8e-94 348.6 249 66.7
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.8e-94 348.6 250 67.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 6.3e-94 348.2 255 67.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.4e-93 347.1 262 64.5
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-93 345.9 251 66.9
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.1e-93 345.5 259 68.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.0e-91 340.9 256 64.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-91 340.9 305 60.0
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-91 340.1 284 59.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-91 340.1 244 69.3
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.9e-91 339.3 309 59.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 2.9e-91 339.3 284 59.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.5e-91 338.2 305 59.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-90 337.4 256 64.8
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-90 337.0 286 64.3
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.5e-90 336.3 252 64.3
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.2e-90 335.5 293 59.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 5.5e-90 335.1 256 63.3
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 5.5e-90 335.1 256 62.9
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-89 333.6 286 58.4
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.6e-89 333.6 286 58.4
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.1e-89 333.2 286 58.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.7e-89 332.8 247 67.6
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.7e-89 332.0 265 66.8
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.0e-87 326.6 285 62.5
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-86 323.9 242 65.7
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.3e-86 323.9 309 58.6
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.7e-86 322.4 240 67.9
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 4.9e-86 322.0 295 59.7
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.3e-86 321.2 217 76.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.1e-85 320.9 343 55.4
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.0e-85 318.2 256 61.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.5e-84 315.8 345 54.5
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 4.5e-84 315.5 327 52.3
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.7e-83 313.5 401 46.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.5e-82 310.5 246 60.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.1e-81 305.1 285 56.5
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 2.3e-80 303.1 240 60.4
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 8.9e-80 301.2 310 53.9
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.2e-79 300.8 227 67.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.1e-77 294.3 257 59.5
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-64 250.4 240 48.8
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.0e-63 246.9 221 55.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 6.4e-62 241.9 241 46.1
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 8.3e-62 241.5 458 37.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.4e-61 240.7 219 58.4
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.1e-61 239.2 167 67.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 6.6e-59 231.9 188 66.0
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.6e-55 219.9 228 46.1
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 9.9e-55 218.0 228 46.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-53 213.8 312 43.3
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 7.1e-53 211.8 226 48.2
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.1e-52 210.3 143 72.0
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 5.1e-51 205.7 132 74.2
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 9.3e-45 184.9 189 48.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 8.4e-38 161.8 124 63.7
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 6.4e-30 135.6 118 54.2
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.5e-23 114.4 75 74.7
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.7e-20 103.6 107 42.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.0e-19 101.7 76 65.8
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.8e-14 83.2 72 56.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.5e-13 80.5 70 57.1
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 3.2e-13 80.1 87 62.1
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 4.2e-13 79.7 70 48.6
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.1e-12 77.4 185 34.1
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-11 73.6 52 65.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.5e-10 71.2 50 74.0
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 7.7e-07 58.9 197 26.4
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 7.7e-07 58.9 207 27.5
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 1.0e-06 58.5 205 26.8
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 1.3e-06 58.2 41 63.4
TAR623G1365 Trochodendron aralioides HOM05D004474 ORTHO05D414940 1.3e-06 58.2 40 75.0
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 2.2e-06 57.4 256 26.6
CiPaw.12G067500 Carya illinoinensis HOM05D002234 ORTHO05D002254 2.9e-06 57.0 196 29.1


User provided reference genes

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