Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 0.0e+00 1303.1 621 100.0
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.5e-310 1067.0 608 82.6
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 9.7e-307 1056.2 633 79.0
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 9.1e-305 1049.7 631 78.6
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 9.1e-305 1049.7 635 77.3
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.5e-302 1041.6 633 78.2
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.5e-302 1041.6 632 77.5
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.5e-302 1041.6 632 77.5
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 4.2e-302 1040.8 633 77.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 4.2e-302 1040.8 633 77.7
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 2.7e-301 1038.1 633 76.9
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.4e-300 1035.8 633 76.1
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 6.7e-300 1033.5 633 76.0
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 8.8e-300 1033.1 633 76.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 9.7e-299 1029.6 633 76.5
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 3.4e-296 1021.1 629 76.9
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 5.9e-296 1020.4 629 76.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 7.7e-296 1020.0 633 76.1
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 6.5e-295 1016.9 634 76.8
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.5e-294 1015.0 633 75.5
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.2e-290 1001.9 636 74.4
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 4.8e-290 1000.7 633 73.6
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.1e-289 999.6 633 73.1
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 4.1e-289 997.7 636 74.5
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.6e-288 995.7 635 75.4
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 5.9e-288 993.8 635 75.4
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.0e-287 993.0 633 73.5
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 4.2e-286 987.6 635 74.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 5.5e-286 987.3 641 72.7
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.4e-284 982.6 635 73.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.8e-284 982.2 633 73.5
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.8e-284 982.2 635 73.5
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.3e-284 981.9 635 74.5
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.8e-282 974.9 633 72.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.4e-281 972.6 594 76.9
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 2.2e-279 965.3 635 72.9
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 2.9e-279 964.9 633 73.5
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 5.7e-275 950.7 636 71.5
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 7.0e-273 943.7 631 71.8
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 6.3e-266 920.6 622 69.1
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-265 919.5 631 69.9
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.4e-265 919.5 633 67.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.8e-265 919.1 605 73.2
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 4.3e-238 828.2 637 63.0
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 5.6e-238 827.8 644 63.5
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.1e-236 823.5 628 62.6
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.3e-230 801.6 628 61.3
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.4e-228 795.8 632 60.6
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 7.6e-227 790.8 632 60.0
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.3e-226 790.0 637 59.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 6.4e-226 787.7 631 59.9
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 6.4e-226 787.7 631 59.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.3e-223 780.0 532 70.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 6.2e-221 771.2 640 58.4
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.7e-216 755.7 539 65.7
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.5e-214 749.2 635 57.5
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.3e-213 746.9 632 57.8
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 4.5e-179 632.1 630 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.3e-178 630.6 635 49.9
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.4e-167 594.0 639 47.4
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.6e-166 589.7 361 77.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 7.8e-131 471.9 725 37.5
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 6.8e-127 458.8 303 71.9
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 8.7e-114 415.2 258 73.3
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.4e-108 397.9 244 75.8
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 1.6e-107 394.4 261 72.0
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 4.6e-107 392.9 247 72.5
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.4e-103 381.3 256 68.4
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 7.6e-102 375.6 256 67.6
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 9.9e-102 375.2 256 69.5
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 2.1e-99 367.5 270 65.2
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.1e-99 367.5 217 76.0
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 1.3e-98 364.8 252 68.7
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-96 358.2 224 75.4
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 6.2e-88 329.3 270 58.9
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 3.9e-82 310.1 251 59.8
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.8e-72 276.6 257 58.0
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 2.6e-57 227.6 170 62.4
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 3.0e-50 204.1 130 77.7
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.9e-44 184.9 188 54.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 5.7e-41 173.3 375 33.1
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.9e-38 163.3 373 33.2
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.0e-37 162.5 366 31.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.0e-37 162.5 366 32.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.7e-37 161.8 384 33.1
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.9e-37 161.0 382 31.7
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 3.8e-37 160.6 370 31.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.6e-37 159.8 353 30.3
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 8.6e-37 159.5 370 32.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.5e-36 158.7 386 32.4
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.5e-36 158.7 370 31.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.9e-36 158.3 373 31.6
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 2.5e-36 157.9 397 32.5
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 3.3e-36 157.5 373 32.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 5.6e-36 156.8 380 31.6
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 7.2e-36 156.4 380 31.6
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 7.2e-36 156.4 374 31.0
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 7.2e-36 156.4 374 31.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 9.5e-36 156.0 361 34.1
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.2e-35 155.6 387 30.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-35 155.2 371 30.5
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.8e-35 154.5 372 32.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.6e-35 154.1 373 32.2
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 6.1e-35 153.3 377 30.2
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 6.1e-35 153.3 371 32.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 6.1e-35 153.3 374 31.6
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 8.0e-35 152.9 377 31.0
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.0e-34 152.5 371 32.3
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.0e-34 152.5 377 30.0
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.0e-34 152.5 386 31.3
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.8e-34 151.8 377 30.2
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.3e-34 151.4 368 32.9
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.0e-34 151.0 365 32.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 5.2e-34 150.2 374 31.6
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.2e-34 150.2 373 31.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 5.2e-34 150.2 372 31.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 6.8e-34 149.8 372 29.8
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 6.8e-34 149.8 372 29.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 8.9e-34 149.4 389 32.4
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 8.9e-34 149.4 364 32.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.0e-33 148.3 392 29.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.6e-33 147.9 397 30.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.6e-33 147.9 368 32.6
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 3.4e-33 147.5 398 30.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.4e-33 147.5 380 31.8
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 4.4e-33 147.1 374 29.7
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 5.7e-33 146.7 359 32.0
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 5.7e-33 146.7 366 31.4
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 7.5e-33 146.4 370 32.7
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 7.5e-33 146.4 372 29.8
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 9.8e-33 146.0 370 31.4
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.3e-32 145.6 374 30.2
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.3e-32 145.6 373 31.6
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.3e-32 145.6 372 31.5
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.2e-32 144.8 373 30.6
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 3.7e-32 144.1 374 31.3
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 6.4e-32 143.3 373 30.3
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 6.4e-32 143.3 374 29.7
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 6.4e-32 143.3 115 59.1
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 8.3e-32 142.9 392 28.8
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.8e-31 141.7 374 30.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.8e-31 141.7 373 29.8
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.4e-31 141.4 398 29.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 9.2e-31 139.4 373 30.3
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 3.5e-30 137.5 391 29.7
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 4.6e-30 137.1 372 29.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.9e-30 136.7 369 30.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 5.9e-30 136.7 399 30.1
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.3e-29 135.6 368 31.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.3e-29 135.6 371 29.1
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.9e-29 134.4 344 29.1
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.9e-29 134.4 371 29.4
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.9e-29 134.0 357 30.5
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.9e-29 134.0 353 29.7
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.5e-28 132.1 371 30.5
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 4.3e-28 130.6 354 31.1
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 5.6e-28 130.2 377 30.8
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.3e-28 129.8 240 34.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.3e-28 129.8 312 32.1
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.1e-27 128.3 317 30.9
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 3.6e-27 127.5 332 29.8
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 3.6e-27 127.5 305 32.5
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 8.0e-27 126.3 249 34.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 8.0e-27 126.3 372 30.9
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.0e-26 125.9 355 29.6
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.1e-26 124.4 306 31.4
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.1e-26 124.4 415 28.0
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.2e-26 123.6 355 30.1
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 9.8e-25 119.4 152 43.4
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 4.9e-24 117.1 330 29.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 4.1e-23 114.0 462 25.3
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.7e-22 111.3 319 29.2
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.6e-22 110.5 385 26.8
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 3.3e-20 104.4 293 25.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 3.3e-20 104.4 306 29.1
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.6e-20 103.6 254 31.1
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.2e-16 91.7 241 31.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 4.9e-16 90.5 239 32.6
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.4e-15 88.2 225 29.3
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.3e-13 82.4 217 28.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.1e-13 80.5 187 29.9
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.3e-12 77.8 159 34.0
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.6e-09 68.2 98 39.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.4e-07 61.6 303 25.1
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.1e-06 58.5 146 30.1
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.1e-06 58.5 86 36.0


User provided reference genes

Program Settings