Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036630 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 3.0e-34 147.9 72 100.0
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 4.5e-30 134.0 68 92.6
CSS0026512 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 4.2e-20 100.9 67 73.1
Actinidia29501 Actinidia chinensis HOM05D000085 ORTHO05D009791 9.7e-17 89.7 60 71.7
Cc10_g13260 Coffea canephora HOM05D000085 ORTHO05D009791 2.8e-16 88.2 64 67.2
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 5.3e-15 84.0 68 61.8
Actinidia03435 Actinidia chinensis HOM05D000085 ORTHO05D009791 2.6e-14 81.6 61 65.6
Manes.02G172500 Manihot esculenta HOM05D000085 ORTHO05D009791 5.9e-14 80.5 51 72.5
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 7.7e-14 80.1 54 68.5
Hma1.2p1_0107F.1_g051220 Hydrangea macrophylla HOM05D000085 ORTHO05D009791 1.7e-13 79.0 65 55.4
Cpa.g.sc26.71 Carica papaya HOM05D000085 ORTHO05D009791 2.9e-13 78.2 54 68.5
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 3.8e-13 77.8 54 66.7
Thecc.08G138000 Theobroma cacao HOM05D000085 ORTHO05D009791 5.0e-13 77.4 54 64.8
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 8.5e-13 76.6 54 66.7
Gorai.005G084800 Gossypium raimondii HOM05D000085 ORTHO05D009791 1.1e-12 76.3 60 60.0
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 1.4e-12 75.9 59 57.6
Potri.005G185500 Populus trichocarpa HOM05D000085 ORTHO05D009791 1.9e-12 75.5 59 59.3
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 3.2e-12 74.7 59 55.9
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 3.2e-12 74.7 54 64.8
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 3.2e-12 74.7 61 59.0
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 4.2e-12 74.3 60 65.0
Eucgr.F02764 Eucalyptus grandis HOM05D000085 ORTHO05D009791 4.2e-12 74.3 59 54.2
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 4.2e-12 74.3 54 63.0
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 4.2e-12 74.3 54 63.0
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 4.2e-12 74.3 54 63.0
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 4.2e-12 74.3 60 53.3
Ciclev10003429m.g Citrus clementina HOM05D000085 ORTHO05D009791 5.5e-12 73.9 54 63.0
MD10G1008700 Malus domestica HOM05D000085 ORTHO05D009791 5.5e-12 73.9 54 63.0
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 9.4e-12 73.2 60 61.7
MD05G1010000 Malus domestica HOM05D000085 ORTHO05D009791 9.4e-12 73.2 54 61.1
CAN.G46.6 Capsicum annuum HOM05D000085 ORTHO05D009791 1.6e-11 72.4 57 54.4
CsaV3_6G031170 Cucumis sativus L. HOM05D000085 ORTHO05D009791 2.1e-11 72.0 59 54.2
Lsat_1_v5_gn_4_135701 Lactuca sativa HOM05D000085 ORTHO05D009791 2.1e-11 72.0 59 55.9
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 2.7e-11 71.6 57 56.1
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 3.6e-11 71.2 72 50.0
COL.COLO4_07812 Corchorus olitorius HOM05D000085 ORTHO05D009791 6.1e-11 70.5 54 59.3
Manes.18G084900 Manihot esculenta HOM05D000085 ORTHO05D009791 7.9e-11 70.1 47 68.1
Nitab4.5_0000174g0070 Nicotiana tabacum HOM05D000085 ORTHO05D009791 1.0e-10 69.7 52 57.7
Peaxi162Scf00066g01519 Petunia axillaris HOM05D000085 ORTHO05D009791 1.0e-10 69.7 57 52.6
GSVIVG01009979001 Vitis vinifera HOM05D000085 ORTHO05D009791 1.4e-10 69.3 54 55.6
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 1.8e-10 68.9 53 56.6
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 2.3e-10 68.6 63 58.7
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 3.9e-10 67.8 64 45.3
CANSAT21G2494 Cannabis sativa HOM05D000085 ORTHO05D009791 5.1e-10 67.4 54 57.4
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 5.1e-10 67.4 57 50.9
VMungo1309G2437 Vigna mungo HOM05D000085 ORTHO05D009791 1.5e-09 65.9 54 57.4
Phvul.009G133000 Phaseolus vulgaris HOM05D000085 ORTHO05D009791 4.3e-09 64.3 54 57.4
TPR.G6314 Trifolium pratense HOM05D000085 ORTHO05D009791 4.3e-09 64.3 54 53.7
Haze_17669 Corylus avellana HOM05D000085 ORTHO05D009791 7.4e-09 63.5 59 47.5
Glyma.13G036300 Glycine max HOM05D000085 ORTHO05D009791 7.4e-09 63.5 53 56.6
Gohir.A02G068901 Gossypium hirsutum HOM05D000085 ORTHO05D009791 7.4e-09 63.5 53 56.6
HanXRQChr09g0254091 Helianthus annuus HOM05D000085 ORTHO05D009791 7.4e-09 63.5 62 51.6
Prupe.8G012200 Prunus persica HOM05D000085 ORTHO05D009791 7.4e-09 63.5 54 59.3
Lj1g0014811 Lotus japonicus HOM05D000085 ORTHO05D009791 2.2e-08 62.0 54 53.7
Gohir.D02G075666 Gossypium hirsutum HOM05D000085 ORTHO05D009791 3.7e-08 61.2 60 53.3
Gorai.005G084900 Gossypium raimondii HOM05D000085 ORTHO05D009791 3.7e-08 61.2 60 53.3
ECA232G1150 Erigeron canadensis HOM05D000085 ORTHO05D009791 1.4e-07 59.3 50 50.0
Ca_16635_v3 Cicer arietinum L. HOM05D000085 ORTHO05D009791 1.8e-07 58.9 52 50.0
Migut.N03251 Erythranthe guttata HOM05D000085 ORTHO05D009791 2.4e-07 58.5 62 45.2
Medtr3g088855 Medicago truncatula HOM05D000085 ORTHO05D009791 3.1e-07 58.2 54 44.4
Zm00001eb145720 Zea mays HOM05D000085 ORTHO05D009791 4.1e-07 57.8 57 47.4
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 6.9e-07 57.0 62 43.5
arahy.Tifrunner.gnm1.ann1.8T63F8 Arachis hypogaea HOM05D000085 ORTHO05D009791 1.2e-06 56.2 48 54.2
arahy.Tifrunner.gnm1.ann1.NCK985 Arachis hypogaea HOM05D000085 ORTHO05D009791 1.5e-06 55.8 48 54.2
SalBow7G4502 Salvia bowleyana HOM05D000085 ORTHO05D009791 1.5e-06 55.8 49 51.0
Psat5g083480 Pisum sativum HOM05D000085 ORTHO05D009791 2.0e-06 55.5 53 45.3
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 5.9e-06 53.9 48 52.1
Glyma.06G120400 Glycine max HOM05D000085 ORTHO05D009791 5.9e-06 53.9 54 50.0


User provided reference genes

Program Settings