Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.5e-262 909.1 486 100.0
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-220 769.2 457 92.3
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.6e-150 536.2 555 58.2
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.2e-148 529.3 539 59.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.4e-127 459.9 592 49.0
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 8.5e-125 451.4 475 58.3
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.0e-122 442.6 529 52.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 4.4e-121 439.1 561 48.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 5.7e-121 438.7 530 50.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 5.4e-119 432.2 567 48.5
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.3e-117 426.8 550 48.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 3.4e-113 412.9 538 45.4
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 5.7e-113 412.1 503 49.3
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.7e-112 409.5 548 48.9
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.9e-112 409.1 553 46.5
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.4e-111 407.5 539 47.9
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.7e-109 400.6 535 47.7
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.1e-108 397.9 542 44.5
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.5e-108 397.5 577 46.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 7.3e-108 395.2 577 46.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.0e-107 391.7 548 44.2
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.0e-106 391.3 537 43.4
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.3e-106 390.2 554 44.4
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.0e-106 389.4 546 46.9
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 6.4e-104 382.1 545 44.4
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 6.4e-104 382.1 539 44.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.1e-103 381.3 542 47.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 4.1e-103 379.4 523 48.0
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.0e-102 377.1 528 44.7
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.7e-102 376.7 536 46.8
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.0e-101 374.8 517 45.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.7e-101 374.0 538 45.9
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 3.0e-101 373.2 495 46.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.5e-100 370.9 526 46.6
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.5e-100 370.9 548 46.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 7.3e-100 368.6 541 43.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.4e-98 364.4 522 45.6
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 2.6e-97 360.1 486 47.9
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 4.4e-97 359.4 655 39.2
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.8e-97 359.0 553 43.8
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 7.5e-97 358.6 581 44.1
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.2e-94 351.3 532 43.6
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.0e-94 350.5 531 44.1
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.0e-93 346.7 559 41.1
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 6.6e-93 345.5 572 39.9
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.5e-92 344.4 318 61.9
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 2.5e-92 343.6 559 40.8
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.3e-92 343.2 520 42.3
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 4.3e-92 342.8 568 42.3
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.6e-91 340.9 540 43.9
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-91 340.9 511 44.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.7e-91 339.3 508 43.3
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 8.1e-91 338.6 543 41.8
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 8.1e-91 338.6 508 43.3
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.1e-90 338.2 428 50.7
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.8e-90 337.4 531 42.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.8e-90 337.4 529 42.7
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.2e-89 334.7 544 41.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.6e-89 333.6 543 41.3
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 7.5e-89 332.0 537 42.8
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-88 329.7 558 43.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 3.7e-88 329.7 575 39.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-87 327.4 550 40.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-86 324.7 576 40.6
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.7e-86 323.6 576 40.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 7.8e-86 322.0 500 43.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 5.1e-85 319.3 547 40.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 5.1e-85 319.3 480 44.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.5e-84 317.0 575 38.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.1e-83 313.9 426 43.7
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.4e-79 301.2 562 39.7
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-79 301.2 476 44.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 7.1e-79 298.9 483 41.8
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.8e-78 295.4 559 38.5
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.0e-77 293.5 559 38.8
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.9e-77 293.1 554 38.8
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-77 293.1 554 38.8
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 3.3e-76 290.0 461 43.0
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.6e-76 289.3 554 37.5
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.0e-73 280.8 404 44.8
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 8.4e-72 275.4 479 38.2
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.4e-71 272.7 479 40.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.5e-70 270.0 454 44.5
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.6e-70 269.6 479 40.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 6.0e-70 269.2 530 36.8
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.7e-69 267.7 476 39.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 6.6e-69 265.8 558 38.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.5e-68 264.6 321 46.7
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.3e-68 263.1 488 38.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 7.3e-68 262.3 478 38.5
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 4.0e-66 256.5 478 38.1
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.4e-65 253.4 466 38.4
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.4e-65 253.4 483 37.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.4e-65 253.4 479 37.4
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.8e-65 252.7 557 36.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 9.9e-65 251.9 474 38.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.7e-64 251.1 474 38.8
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-64 250.8 478 37.9
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.9e-64 250.4 484 36.6
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.8e-64 250.0 474 38.6
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.8e-64 250.0 474 38.6
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.8e-64 250.0 474 38.6
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-63 248.1 476 36.8
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 2.4e-63 247.3 483 37.7
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.2e-63 246.9 479 37.2
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.8e-61 241.1 516 35.7
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.9e-61 240.0 460 39.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.8e-59 233.8 441 38.5
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.3e-58 229.6 353 44.5
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-57 228.0 220 57.7
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 2.6e-57 227.3 460 35.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-57 227.3 462 35.5
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 3.4e-57 226.9 439 37.6
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.9e-56 223.8 420 42.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 6.4e-56 222.6 481 36.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.4e-56 222.2 460 37.2
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.2e-55 220.3 377 42.4
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.2e-55 219.9 572 33.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.0e-54 216.1 460 37.6
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 3.0e-53 213.8 346 39.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.1e-50 205.3 554 30.9
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-46 190.3 451 35.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.1e-45 186.4 285 44.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.3e-43 179.5 444 35.8
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.5e-41 173.3 390 33.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.5e-41 173.3 143 63.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 5.9e-41 172.9 336 36.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.7e-40 171.4 414 34.8
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 3.2e-39 167.2 456 30.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.7e-38 164.1 299 38.8
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.4e-31 141.7 117 59.0
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 3.3e-28 130.6 162 43.8
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 5.7e-28 129.8 307 35.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-24 117.9 380 31.6
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 2.2e-24 117.9 316 30.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 2.9e-24 117.5 98 59.2
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.2e-23 114.0 80 68.8
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 2.7e-22 110.9 142 43.7
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 6.1e-22 109.8 291 27.8
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.8e-19 100.9 100 56.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 3.1e-18 97.4 158 40.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 7.7e-17 92.8 134 46.3
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 5.0e-16 90.1 130 41.5
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 5.0e-16 90.1 308 33.4
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.1e-15 89.0 71 54.9
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.8e-13 81.6 124 42.7
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 6.3e-11 73.2 291 24.1


User provided reference genes

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