Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.0e-117 426.8 225 100.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 8.9e-85 317.4 210 83.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-84 317.0 250 72.4
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 9.8e-84 313.9 250 71.6
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-83 313.2 253 70.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-83 313.2 253 70.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.7e-83 313.2 253 70.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-83 312.4 250 72.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.9e-83 312.4 250 71.6
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 3.7e-83 312.0 253 70.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 4.9e-83 311.6 250 72.0
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 8.3e-83 310.8 250 71.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-82 310.5 253 70.0
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.1e-82 310.5 253 70.0
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.1e-82 310.5 250 70.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-82 310.1 250 71.2
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.9e-82 309.7 250 71.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.4e-82 309.3 250 71.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.2e-82 308.9 253 69.6
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.4e-82 308.1 250 71.2
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.4e-82 308.1 250 70.8
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 9.2e-82 307.4 251 69.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.1e-81 306.2 250 70.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.7e-81 305.8 250 70.0
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.7e-81 305.8 250 69.2
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.5e-81 305.4 253 68.8
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.5e-81 305.4 253 68.8
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 7.8e-81 304.3 250 68.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.3e-80 303.5 250 70.4
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.7e-80 303.1 250 69.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.7e-80 303.1 250 69.6
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.7e-80 303.1 250 69.6
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.7e-80 303.1 250 68.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.7e-80 303.1 251 68.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.7e-80 303.1 250 69.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.3e-80 302.8 250 70.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.3e-80 302.8 251 68.9
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.9e-80 302.0 250 69.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.1e-80 301.6 250 69.6
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 6.6e-80 301.2 250 68.8
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 6.6e-80 301.2 254 68.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 6.6e-80 301.2 250 68.8
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 6.6e-80 301.2 250 69.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 8.6e-80 300.8 250 68.8
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.1e-79 300.4 250 68.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.5e-79 300.1 250 68.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.9e-79 299.7 250 69.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.5e-79 299.3 253 68.0
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.5e-79 299.3 250 68.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.3e-79 298.9 247 70.4
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.3e-79 298.5 254 68.9
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.6e-79 298.1 250 68.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.5e-79 297.4 250 67.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.5e-79 297.4 250 67.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.5e-79 297.4 249 67.9
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.2e-78 297.0 250 68.4
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.6e-78 296.6 250 67.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.8e-78 295.8 250 67.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.8e-78 295.8 250 68.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.8e-78 295.8 250 68.0
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.8e-78 295.8 254 65.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 3.6e-78 295.4 253 65.6
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.6e-78 295.4 250 68.8
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 4.7e-78 295.0 250 68.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 8.1e-78 294.3 250 67.6
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 8.1e-78 294.3 250 67.6
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.8e-77 293.1 250 67.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.8e-77 293.1 250 66.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.1e-77 292.4 249 65.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.1e-77 292.4 250 66.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 8.9e-77 290.8 250 65.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.2e-76 290.4 250 65.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.2e-76 290.4 250 66.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.5e-76 290.0 250 66.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.6e-76 289.3 250 66.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.6e-76 289.3 250 66.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.6e-76 289.3 249 65.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.4e-76 288.9 250 64.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.6e-76 287.7 250 63.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 9.9e-76 287.3 251 65.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 9.9e-76 287.3 251 65.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.3e-75 287.0 238 68.5
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.7e-75 286.6 250 63.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.7e-75 286.6 250 64.8
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.2e-75 286.2 250 65.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.2e-75 286.2 253 64.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.9e-75 285.0 251 65.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 8.4e-75 284.3 251 65.7
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.2e-73 280.4 249 63.9
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.6e-73 280.0 253 63.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.7e-73 279.3 250 63.2
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.5e-73 278.9 250 63.6
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 4.6e-73 278.5 238 67.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 4.6e-73 278.5 251 64.5
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 6.0e-73 278.1 246 65.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.3e-72 276.9 253 63.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.7e-72 276.6 238 66.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.7e-72 276.6 251 64.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.3e-72 276.2 250 63.6
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.5e-71 273.5 250 63.6
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.5e-71 272.7 249 62.2
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.3e-71 271.9 240 67.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 9.6e-71 270.8 249 62.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.6e-70 270.0 249 62.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.6e-70 270.0 251 63.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.8e-70 269.2 249 62.2
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 4.7e-70 268.5 250 61.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.7e-70 268.5 250 61.6
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 4.7e-70 268.5 250 61.6
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 4.7e-70 268.5 250 61.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.7e-70 268.5 250 61.6
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 4.7e-70 268.5 239 65.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 6.2e-70 268.1 249 61.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 6.2e-70 268.1 249 61.8
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-70 268.1 249 61.8
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.2e-70 268.1 249 61.8
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.1e-69 267.3 249 61.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.1e-69 267.3 251 63.3
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.8e-69 266.5 251 63.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.2e-69 265.0 250 60.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.8e-68 261.5 250 61.6
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.9e-67 259.2 257 59.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.4e-66 256.1 251 61.8
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.2e-66 255.8 226 66.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 3.2e-66 255.8 218 68.8
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 5.4e-66 255.0 251 61.8
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.2e-65 253.8 251 61.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.6e-65 251.9 257 57.2
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.7e-64 250.0 240 62.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 8.7e-64 247.7 236 61.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-63 246.1 219 65.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.3e-62 243.8 214 66.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.1e-62 243.0 238 58.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.1e-62 243.0 234 60.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.8e-62 241.9 236 59.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 8.1e-62 241.1 229 63.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 5.3e-61 238.4 210 66.7
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.6e-60 234.6 241 56.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.2e-59 233.0 226 58.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.2e-57 227.3 219 59.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.1e-55 220.7 219 58.4
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.5e-55 220.3 225 57.8
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.1e-53 214.2 221 58.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.5e-52 210.3 239 54.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.5e-52 208.8 229 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.4e-50 203.0 225 55.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 7.1e-50 201.4 254 49.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.3e-47 192.2 192 61.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 9.0e-45 184.5 208 53.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-42 177.2 250 49.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.0e-40 171.0 234 47.0
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.9e-39 166.8 210 48.6
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.4e-37 159.8 105 80.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-34 151.0 132 63.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-34 147.9 124 66.1
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.1e-33 146.7 120 69.2
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.2e-30 136.7 167 52.1
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.0e-29 131.3 189 43.9
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 6.5e-27 125.2 148 50.7
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.5e-26 123.2 193 42.0
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.5e-23 113.2 88 64.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-20 104.0 126 51.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 4.5e-12 75.9 64 67.2


User provided reference genes

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