Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 5.7e-164 580.9 299 100.0
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 5.1e-120 434.9 299 75.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.2e-106 389.0 302 69.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.0e-104 382.5 300 70.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.8e-102 375.2 303 66.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.8e-100 368.2 300 69.3
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.1e-93 345.9 292 66.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.0e-79 300.1 297 60.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.5e-76 289.3 267 61.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.5e-76 289.3 297 57.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.5e-76 288.9 297 57.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.7e-76 288.1 291 59.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.9e-75 286.2 297 57.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.9e-75 286.2 297 57.6
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.0e-75 285.4 269 59.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.9e-74 283.5 297 53.9
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.2e-74 282.7 297 55.2
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 9.4e-74 281.2 282 57.8
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.6e-73 280.4 297 53.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.7e-73 279.6 299 58.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 6.1e-73 278.5 296 56.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.8e-72 276.9 298 57.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.3e-72 276.6 300 55.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.6e-71 273.1 299 57.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.6e-71 273.1 298 52.3
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.8e-70 269.6 299 56.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.8e-69 266.9 292 54.1
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.0e-68 263.5 287 51.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.5e-67 258.5 270 56.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.5e-67 258.5 303 53.5
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 9.4e-66 254.6 300 52.0
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.6e-65 253.8 298 51.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.6e-65 252.7 295 53.6
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-64 250.8 298 51.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.2e-64 248.8 291 52.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.2e-64 248.8 291 49.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.2e-64 248.8 291 51.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 8.8e-64 248.1 276 54.3
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.0e-63 246.9 314 47.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.4e-63 245.7 282 54.3
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 9.7e-63 244.6 300 51.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.2e-62 243.4 282 51.1
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.8e-62 242.3 301 51.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.1e-61 239.2 272 49.6
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-60 237.7 291 49.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.7e-60 236.5 300 49.7
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 2.7e-60 236.5 291 49.5
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.7e-60 236.5 267 52.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 5.9e-60 235.3 251 55.0
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.2e-59 233.4 294 51.0
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.0e-59 232.3 275 52.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.9e-58 230.3 291 49.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.0e-57 224.9 266 48.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.3e-56 223.4 262 53.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 5.2e-56 222.2 290 53.4
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.0e-55 220.3 285 46.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.0e-55 220.3 294 48.6
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.0e-55 220.3 302 48.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.7e-54 216.1 300 48.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-53 214.2 283 50.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.0e-53 211.8 283 50.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.0e-52 210.3 277 50.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 3.5e-52 209.5 242 50.4
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 7.7e-52 208.4 263 48.3
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 7.7e-52 208.4 289 50.5
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.3e-51 206.8 267 48.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.9e-51 206.5 283 48.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 4.7e-49 199.1 300 45.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.8e-46 189.9 280 46.4
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.1e-45 188.0 256 48.8
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 2.7e-44 183.3 190 52.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.3e-42 176.0 259 45.9
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 5.6e-42 175.6 282 45.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.6e-42 175.6 293 41.6
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.3e-42 175.3 249 48.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-40 169.5 216 50.9
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.2e-39 167.9 289 40.8
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.6e-39 166.8 263 43.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-37 161.0 213 49.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.2e-37 158.3 277 41.5
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-34 151.0 251 45.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.3e-34 148.7 289 40.5
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.8e-32 142.1 297 37.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-31 141.4 263 39.9
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.2e-31 141.4 285 36.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.6e-31 140.2 229 44.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.5e-31 138.7 119 64.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 9.8e-31 138.3 305 39.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-30 137.9 280 36.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-30 137.9 273 38.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.3e-30 137.9 199 46.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.7e-30 136.3 278 37.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 6.4e-30 135.6 298 36.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.4e-29 134.4 146 56.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-29 134.0 142 57.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-29 134.0 142 57.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.9e-29 134.0 146 56.2
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.2e-29 133.3 270 37.4
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-28 131.3 280 37.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-28 131.3 266 38.3
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-28 130.2 142 57.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.5e-28 129.8 276 37.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 4.6e-28 129.4 284 36.6
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.6e-28 129.4 276 37.3
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 7.8e-28 128.6 256 37.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-27 127.9 267 37.5
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.7e-27 127.5 290 36.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-27 127.1 129 58.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-26 124.8 297 34.7
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.3e-26 123.2 126 56.3
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 9.5e-26 121.7 286 35.3
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-25 120.6 231 40.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.1e-25 120.6 256 37.1
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.6e-25 119.8 280 35.4
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 4.7e-25 119.4 205 42.0
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 6.2e-25 119.0 230 40.4
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 6.8e-24 115.5 256 33.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 8.9e-24 115.2 240 36.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-23 114.8 269 36.4
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-22 109.4 259 32.8
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.2e-21 106.7 283 33.2
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-21 106.3 270 35.6
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.4e-21 105.9 270 34.8
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.1e-21 105.5 179 43.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.7e-20 103.6 82 69.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.0e-20 102.4 282 32.6
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-19 100.9 274 33.9
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 5.1e-19 99.4 221 36.7
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.1e-19 99.4 103 50.5
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.6e-19 98.6 282 33.3
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.5e-18 97.8 139 44.6
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 3.3e-18 96.7 282 32.6
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 4.7e-17 92.8 285 32.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.7e-17 92.8 140 47.1
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.4e-16 91.3 212 36.8
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.8e-16 90.9 110 47.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.9e-16 88.6 262 30.5
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.2e-15 88.2 265 32.1
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.6e-15 87.0 232 33.2
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.6e-15 87.0 222 35.1
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 2.6e-15 87.0 180 37.2
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.6e-15 87.0 230 33.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.4e-15 86.7 223 35.0
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.4e-15 86.3 68 69.1
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.4e-15 86.3 153 42.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.7e-14 84.3 317 28.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.2e-14 84.0 221 34.4
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.9e-14 82.8 118 42.4
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.4e-13 81.3 95 46.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.9e-13 80.9 281 30.2
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-13 80.5 236 31.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-12 78.2 69 66.7
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.2e-12 78.2 255 30.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.1e-12 77.4 124 41.9
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.0e-12 75.9 270 28.5
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.8e-12 75.5 265 29.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.3e-11 73.9 93 44.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.0e-11 73.6 160 38.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.1e-11 72.8 66 66.7
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-10 71.6 95 47.4
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-10 71.6 228 28.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.5e-10 71.2 66 65.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.5e-10 70.5 74 47.3
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 3.3e-10 70.1 202 30.2
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.3e-10 69.7 65 56.9
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 9.6e-10 68.6 155 31.0
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.6e-10 68.6 112 36.6
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.6e-09 67.8 78 53.8
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.1e-09 67.4 128 36.7
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.6e-09 66.6 65 56.9
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 5.3e-08 62.8 145 33.8
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 6.9e-08 62.4 196 32.1
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 2.6e-07 60.5 101 34.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.9e-06 56.2 68 48.5
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.4e-06 55.8 207 30.0


User provided reference genes

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