Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-52 209.1 98 100.0
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.4e-44 180.3 129 72.9
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.1e-42 174.5 129 70.5
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.3e-42 174.1 129 72.1
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-32 142.1 115 70.4
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.4e-28 127.1 129 58.9
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.7e-14 81.3 88 54.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 2.0e-12 75.9 88 48.9
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 4.4e-12 74.7 85 49.4
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 4.4e-12 74.7 85 49.4
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 7.5e-12 73.9 89 47.2
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 2.8e-11 72.0 84 47.6
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 3.7e-11 71.6 84 46.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 3.7e-11 71.6 84 47.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.1e-10 70.1 88 46.6
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.1e-10 70.1 87 47.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.4e-10 69.7 88 46.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.8e-10 69.3 88 45.5
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.8e-10 69.3 88 44.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 2.4e-10 68.9 89 46.1
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.4e-10 68.9 87 46.0
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 5.4e-10 67.8 84 46.4
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 5.4e-10 67.8 88 45.5
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 7.0e-10 67.4 87 44.8
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 7.0e-10 67.4 86 45.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 7.0e-10 67.4 89 44.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 9.1e-10 67.0 87 43.7
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 9.1e-10 67.0 82 46.3
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 9.1e-10 67.0 90 43.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 9.1e-10 67.0 86 45.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.2e-09 66.6 87 42.5
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.2e-09 66.6 88 44.3
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.2e-09 66.6 81 45.7
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 1.6e-09 66.2 88 45.5
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.0e-09 65.9 80 46.2
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.0e-09 65.9 86 44.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.7e-09 65.5 82 45.1
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 2.7e-09 65.5 88 43.2
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.7e-09 65.5 81 45.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.7e-09 65.5 90 41.1
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 3.5e-09 65.1 83 44.6
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.9e-09 64.3 81 44.4
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 5.9e-09 64.3 82 43.9
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 5.9e-09 64.3 83 44.6
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.7e-09 63.9 86 46.5
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 7.7e-09 63.9 87 40.2
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 7.7e-09 63.9 87 40.2
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 7.7e-09 63.9 83 44.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 7.7e-09 63.9 93 43.0
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 7.7e-09 63.9 83 43.4
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.0e-08 63.5 99 40.4
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.0e-08 63.5 86 45.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.0e-08 63.5 80 47.5
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-08 63.2 77 41.6
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-08 63.2 77 41.6
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-08 63.2 77 41.6
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.3e-08 63.2 80 46.2
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.3e-08 63.2 80 43.8
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.7e-08 62.8 80 45.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.7e-08 62.8 88 43.2
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.7e-08 62.8 88 43.2
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.7e-08 62.8 83 43.4
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.7e-08 62.8 83 43.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.7e-08 62.8 97 42.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.7e-08 62.8 97 42.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.2e-08 62.4 88 42.0
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 2.9e-08 62.0 81 43.2
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 2.9e-08 62.0 80 42.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.9e-08 62.0 82 43.9
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 5.0e-08 61.2 83 42.2
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 5.0e-08 61.2 82 42.7
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 6.5e-08 60.8 80 42.5
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.5e-08 60.8 82 41.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 6.5e-08 60.8 80 42.5
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 6.5e-08 60.8 80 45.0
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 8.5e-08 60.5 87 39.1
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 8.5e-08 60.5 79 44.3
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 8.5e-08 60.5 97 35.1
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-07 60.1 87 39.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.1e-07 60.1 87 39.1
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.1e-07 60.1 87 39.1
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-07 60.1 82 40.2
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.1e-07 60.1 79 43.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.5e-07 59.7 81 42.0
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.5e-07 59.7 80 43.8
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.9e-07 59.3 80 42.5
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 3.2e-07 58.5 80 43.8
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 5.5e-07 57.8 80 42.5
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 5.5e-07 57.8 97 39.2
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 5.5e-07 57.8 79 43.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 7.2e-07 57.4 80 38.8
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 7.2e-07 57.4 109 36.7
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.6e-06 56.2 80 41.2
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.1e-06 55.8 77 42.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.7e-06 55.5 93 33.3
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 4.7e-06 54.7 83 38.6
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 4.7e-06 54.7 92 39.1
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 6.1e-06 54.3 80 41.2


User provided reference genes

Program Settings