Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 5.8e-166 587.4 282 100.0
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.1e-87 325.5 306 63.1
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-19 101.3 145 45.5
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.5e-17 92.8 47 93.6
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 5.8e-17 92.4 47 91.5
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 1.3e-16 91.3 47 89.4
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 1.3e-16 91.3 47 89.4
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.7e-16 90.9 47 85.1
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.2e-16 90.5 47 89.4
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.2e-16 90.5 47 89.4
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.2e-16 90.5 47 89.4
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.2e-16 90.5 43 93.0
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.2e-16 90.5 47 89.4
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 2.9e-16 90.1 47 87.2
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.9e-16 90.1 47 87.2
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 2.9e-16 90.1 47 87.2
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 2.9e-16 90.1 47 87.2
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.9e-16 90.1 47 87.2
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.8e-16 89.7 40 97.5
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.8e-16 89.7 47 87.2
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.8e-16 89.7 43 93.0
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 87.2
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 85.1
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 4.9e-16 89.4 46 87.0
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 89.4
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 89.4
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 87.2
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 85.1
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.9e-16 89.4 47 89.4
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 87.2
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 6.5e-16 89.0 47 85.1
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 8.4e-16 88.6 43 90.7
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 8.4e-16 88.6 43 90.7
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 8.4e-16 88.6 43 90.7
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 8.4e-16 88.6 43 90.7
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 8.4e-16 88.6 47 85.1
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 8.4e-16 88.6 43 90.7
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 8.4e-16 88.6 47 87.2
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 8.4e-16 88.6 47 85.1
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 1.1e-15 88.2 45 88.9
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 1.1e-15 88.2 43 88.4
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.1e-15 88.2 42 92.9
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 1.4e-15 87.8 46 87.0
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 1.4e-15 87.8 46 87.0
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 1.4e-15 87.8 47 85.1
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 1.4e-15 87.8 46 87.0
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.9e-15 87.4 43 90.7
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 1.9e-15 87.4 46 84.8
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 1.9e-15 87.4 46 84.8
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.9e-15 87.4 43 90.7
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.5e-15 87.0 47 83.0
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 88.4
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 2.5e-15 87.0 45 86.7
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 86.0
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 88.4
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 86.0
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 2.5e-15 87.0 46 87.0
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 86.0
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 2.5e-15 87.0 43 86.0
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 90.7
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 90.7
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 90.7
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 3.2e-15 86.7 46 87.0
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 3.2e-15 86.7 41 92.7
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 3.2e-15 86.7 43 88.4
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 4.2e-15 86.3 47 83.0
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 4.2e-15 86.3 46 82.6
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 4.2e-15 86.3 47 85.1
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.2e-15 86.3 46 82.6
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 5.5e-15 85.9 46 80.4
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 5.5e-15 85.9 46 80.4
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 5.5e-15 85.9 46 80.4
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.5e-15 85.9 47 87.2
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 5.5e-15 85.9 42 88.1
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.5e-15 85.9 43 86.0
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.5e-15 85.9 43 86.0
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 5.5e-15 85.9 42 88.1
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 5.5e-15 85.9 42 88.1
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 5.5e-15 85.9 42 88.1
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 7.1e-15 85.5 43 86.0
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 9.3e-15 85.1 43 86.0
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 9.3e-15 85.1 43 86.0
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 9.3e-15 85.1 46 84.8
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 1.2e-14 84.7 46 78.3
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 1.2e-14 84.7 43 83.7
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.2e-14 84.7 46 80.4
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 1.2e-14 84.7 43 83.7
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.6e-14 84.3 41 87.8
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.6e-14 84.3 41 87.8
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 1.6e-14 84.3 45 82.2
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.6e-14 84.3 42 85.7
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 1.6e-14 84.3 43 83.7
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.6e-14 84.3 43 86.0
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.6e-14 84.3 43 86.0
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 2.1e-14 84.0 42 85.7
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.1e-14 84.0 47 78.7
CSS0042465 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.7e-14 83.6 43 93.0
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.7e-14 83.6 39 92.3
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 3.5e-14 83.2 43 81.4
CSS0050272 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 4.6e-14 82.8 46 84.8
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 4.6e-14 82.8 42 83.3
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 6.0e-14 82.4 47 76.6
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.0e-13 81.6 40 87.5
CSS0028589 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.0e-13 81.6 50 80.0
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.3e-13 81.3 42 81.0
CSS0023794 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D016659 3.9e-13 79.7 97 48.5
CSS0004288 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 5.1e-13 79.3 46 82.6
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.5e-12 77.8 43 76.7
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.5e-12 77.8 40 80.0
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.9e-12 77.4 43 76.7
CSS0028883 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 4.3e-12 76.3 46 80.4
CSS0030354 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 7.4e-12 75.5 46 78.3
CSS0039424 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 7.4e-12 75.5 43 83.7
CSS0026704 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 9.6e-12 75.1 40 87.5
CSS0030083 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.6e-11 74.3 46 73.9
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.1e-11 73.9 35 88.6
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 8.2e-11 72.0 35 85.7
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 1.1e-10 71.6 35 85.7
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.1e-10 71.6 39 71.8
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.4e-10 71.2 34 88.2
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.4e-10 71.2 34 88.2
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.4e-10 71.2 35 85.7
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.4e-10 70.5 34 88.2
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 3.1e-10 70.1 43 60.5
CSS0008448 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.1e-10 70.1 51 70.6
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 3.1e-10 70.1 39 69.2
CSS0038264 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.2e-09 68.2 42 78.6
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.0e-09 67.4 46 56.5
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.6e-09 67.0 39 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 3.4e-09 66.6 39 61.5
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 4.5e-09 66.2 32 87.5
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 4.5e-09 66.2 30 90.0
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 4.5e-09 66.2 32 87.5
CSS0033845 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 7.6e-09 65.5 35 85.7
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 7.6e-09 65.5 32 87.5
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.0e-08 65.1 38 76.3
CSS0043824 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.3e-08 64.7 47 72.3
CSS0045136 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 1.3e-08 64.7 34 88.2
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.1e-07 61.6 27 96.3
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 7.2e-07 58.9 46 54.3
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 9.3e-07 58.5 27 88.9
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.1e-06 57.4 41 53.7


User provided reference genes

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