Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036536 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 3.7e-65 251.5 140 100.0
Rhsim06G0148700 Rhododendron simsii HOM05D006722 ORTHO05D007944 4.8e-28 128.3 138 55.1
CSS0017413 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 6.2e-28 127.9 143 55.9
CSS0029289 Camellia sinensis var. sinensis HOM05D006722 ORTHO05D007944 1.8e-27 126.3 142 56.3
Oeu029925.1 Olea europaea HOM05D006722 ORTHO05D007944 2.6e-26 122.5 124 55.6
Actinidia09877 Actinidia chinensis HOM05D006722 ORTHO05D007944 1.7e-25 119.8 141 57.4
Oeu029927.1 Olea europaea HOM05D006722 ORTHO05D007944 1.7e-25 119.8 106 58.5
Rhsim06G0148800 Rhododendron simsii HOM05D006722 ORTHO05D007944 1.2e-23 113.6 129 61.2
Peaxi162Scf00132g00074 Petunia axillaris HOM05D006722 ORTHO05D007944 4.6e-23 111.7 138 47.1
Hma1.2p1_0875F.1_g231440 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 1.8e-22 109.8 134 50.7
Rhsim04G0066600 Rhododendron simsii HOM05D006722 ORTHO05D007944 6.7e-22 107.8 140 47.1
Sopen07g028260 Solanum pennellii HOM05D006722 ORTHO05D007944 2.5e-21 105.9 116 48.3
Cc05_g06730 Coffea canephora HOM05D006722 ORTHO05D007944 3.3e-21 105.5 131 57.3
DCAR_006245 Daucus carota HOM05D006722 ORTHO05D007944 1.3e-20 103.6 125 46.4
Lj8C115G8 Lonicera japonica HOM05D000389 ORTHO05D000287 3.7e-20 102.1 114 50.9
Lsat_1_v5_gn_3_39421 Lactuca sativa HOM05D006722 ORTHO05D007944 6.2e-20 101.3 97 54.6
Migut.H01052 Erythranthe guttata HOM05D006722 ORTHO05D007944 8.1e-20 100.9 135 44.4
Atru.chr6.3036 Acer truncatum HOM05D006722 ORTHO05D007944 1.1e-19 100.5 142 49.3
Migut.H01053 Erythranthe guttata HOM05D006722 ORTHO05D007944 1.1e-19 100.5 135 45.2
HanXRQChr10g0289571 Helianthus annuus HOM05D006722 ORTHO05D007944 1.1e-19 100.5 136 45.6
Solyc07g054310.3 Solanum lycopersicum HOM05D006722 ORTHO05D007944 1.1e-19 100.5 125 44.8
HanXRQChr17g0559971 Helianthus annuus HOM05D006722 ORTHO05D007944 2.4e-19 99.4 126 42.1
PGSC0003DMG400018315 Solanum tuberosum HOM05D006722 ORTHO05D007944 2.4e-19 99.4 129 54.3
Migut.H01051 Erythranthe guttata HOM05D006722 ORTHO05D007944 4.0e-19 98.6 125 48.0
TAR141G0004 Trochodendron aralioides HOM05D006722 ORTHO05D007944 9.0e-19 97.4 164 49.4
Prupe.3G234900 Prunus persica HOM05D006722 ORTHO05D007944 3.4e-18 95.5 129 48.1
DCAR_023670 Daucus carota HOM05D006722 ORTHO05D007944 1.7e-17 93.2 128 46.9
Duzib132G0356 Durio zibethinus HOM05D006722 ORTHO05D007944 2.9e-17 92.4 125 47.2
MSTRG.14198 Avicennia marina HOM05D006722 ORTHO05D007944 4.9e-17 91.7 128 46.1
Lj3g0001103 Lotus japonicus HOM05D006722 ORTHO05D007944 4.9e-17 91.7 129 44.2
Thecc.02G175500 Theobroma cacao HOM05D006722 ORTHO05D007944 6.5e-17 91.3 131 45.8
Lalb_Chr14g0366741 Lupinus albus HOM05D006722 ORTHO05D007944 1.9e-16 89.7 136 44.9
DCAR_006246 Daucus carota HOM05D006722 ORTHO05D007944 2.5e-16 89.4 124 42.7
TWI36G1477 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 9.3e-16 87.4 120 45.8
ECA246G2923 Erigeron canadensis HOM05D006722 ORTHO05D007944 1.2e-15 87.0 133 39.8
TWI75G0677 Tripterygium wilfordii HOM05D006722 ORTHO05D007944 1.6e-15 86.7 134 44.8
Lsat_1_v5_gn_4_70120 Lactuca sativa HOM05D006722 ORTHO05D007944 2.1e-15 86.3 137 40.9
MD17G1079900 Malus domestica HOM05D006722 ORTHO05D007944 6.0e-15 84.7 130 53.1
RcHm_v2.0_Chr2g0162351 Rosa chinensis HOM05D006722 ORTHO05D007944 6.0e-15 84.7 122 54.1
Ciclev10017219m.g Citrus clementina HOM05D006722 ORTHO05D007944 1.3e-14 83.6 130 42.3
CANSAT64G0061 Cannabis sativa HOM05D006722 ORTHO05D007944 1.8e-14 83.2 145 41.4
Medtr4g037560 Medicago truncatula HOM05D006722 ORTHO05D007944 2.3e-14 82.8 133 51.9
FAN14G5843 Fragaria x ananassa HOM05D006722 ORTHO05D007944 3.0e-14 82.4 119 46.2
Nitab4.5_0005380g0010 Nicotiana tabacum HOM05D006722 ORTHO05D007944 3.9e-14 82.0 123 40.7
Actinidia11069 Actinidia chinensis HOM05D006722 ORTHO05D007944 6.7e-14 81.3 88 52.3
Medtr4g037480 Medicago truncatula HOM05D006722 ORTHO05D007944 1.5e-13 80.1 135 43.7
Glyma.13G299400 Glycine max HOM05D006722 ORTHO05D007944 1.9e-13 79.7 133 45.1
Eucgr.A01793 Eucalyptus grandis HOM05D006722 ORTHO05D007944 3.3e-13 79.0 118 39.8
TPR.G35552 Trifolium pratense HOM05D006722 ORTHO05D007944 4.3e-13 78.6 140 43.6
Medtr2g090185 Medicago truncatula HOM05D006722 ORTHO05D007944 5.7e-13 78.2 140 42.1
BcaB08g34945 Brassica carinata HOM05D006722 ORTHO05D007944 4.8e-12 75.1 134 38.8
Glyma.06G296300 Glycine max HOM05D006722 ORTHO05D007944 6.3e-12 74.7 136 47.1
Psat5g270720 Pisum sativum HOM05D006722 ORTHO05D007944 6.3e-12 74.7 145 46.2
A09p58680 Brassica napus HOM05D006722 ORTHO05D007944 8.2e-12 74.3 116 40.5
BraA09t41254Z Brassica rapa HOM05D006722 ORTHO05D007944 8.2e-12 74.3 116 39.7
Duzib052G0119 Durio zibethinus HOM05D006722 ORTHO05D007944 1.1e-11 73.9 131 40.5
Duzib052G0455 Durio zibethinus HOM05D006722 ORTHO05D007944 1.1e-11 73.9 131 40.5
Manes.13G149300 Manihot esculenta HOM05D006722 ORTHO05D007944 1.4e-11 73.6 152 41.4
Sp3g34120 Schrenkiella parvula HOM05D006722 ORTHO05D007944 1.8e-11 73.2 134 39.6
BcaC07g41191 Brassica carinata HOM05D006722 ORTHO05D007944 3.1e-11 72.4 134 38.1
C08p41970 Brassica napus HOM05D006722 ORTHO05D007944 3.1e-11 72.4 134 38.1
BolC8t51760H Brassica oleracea HOM05D006722 ORTHO05D007944 3.1e-11 72.4 134 38.1
Ca_01515_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 3.1e-11 72.4 140 45.7
Ca_05301_v3 Cicer arietinum L. HOM05D006722 ORTHO05D007944 3.1e-11 72.4 139 53.2
Aa31LG8G17780 Aethionema arabicum HOM05D006722 ORTHO05D007944 4.1e-11 72.0 128 39.8
Lj3g0012520 Lotus japonicus HOM05D006722 ORTHO05D007944 6.9e-11 71.2 141 49.6
ATR0693G370 Amborella trichopoda HOM05D041462 ORTHO05D007944 9.0e-11 70.9 127 39.4
COL.COLO4_35406 Corchorus olitorius HOM05D006722 ORTHO05D007944 1.5e-10 70.1 131 46.6
AT2G20870 Arabidopsis thaliana HOM05D006722 ORTHO05D007944 2.0e-10 69.7 109 43.1
Carub.0003s3553 Capsella rubella HOM05D006722 ORTHO05D007944 2.0e-10 69.7 145 36.6
Gohir.A03G158500 Gossypium hirsutum HOM05D006722 ORTHO05D007944 2.0e-10 69.7 126 40.5
Gohir.D02G181700 Gossypium hirsutum HOM05D006722 ORTHO05D007944 2.0e-10 69.7 126 40.5
Gorai.005G204200 Gossypium raimondii HOM05D006722 ORTHO05D007944 2.0e-10 69.7 126 40.5
AL3G54120 Arabidopsis lyrata HOM05D006722 ORTHO05D007944 7.6e-10 67.8 114 40.4
THA.LOC104824711 Tarenaya hassleriana HOM05D006722 ORTHO05D007944 7.6e-10 67.8 102 45.1
HPP92_001821 Vanilla planifolia HOM05D026263 ORTHO05D007944 1.0e-09 67.4 120 40.0
ClCG02G017440 Citrullus lanatus HOM05D006722 ORTHO05D007944 1.3e-09 67.0 117 39.3
Thhalv10002109m.g Eutrema salsugineum HOM05D006722 ORTHO05D007944 1.3e-09 67.0 137 38.7
PGR042G1420 Punica granatum HOM05D006722 ORTHO05D007944 1.3e-09 67.0 128 45.3
Phvul.011G113200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 2.2e-09 66.2 155 41.3
FAN02G2988 Fragaria x ananassa HOM05D006722 ORTHO05D007944 2.9e-09 65.9 114 42.1
CARHR111610 Cardamine hirsuta HOM05D006722 ORTHO05D007944 3.8e-09 65.5 98 43.9
Gohir.D12G141200 Gossypium hirsutum HOM05D006722 ORTHO05D007944 6.5e-09 64.7 131 41.2
TPR.G21773 Trifolium pratense HOM05D006722 ORTHO05D007944 1.1e-08 63.9 141 45.4
VMungo1080G0484 Vigna mungo HOM05D006722 ORTHO05D007944 1.1e-08 63.9 137 47.4
MBI02_g19252_MAGBIO Magnolia biondii HOM05D006722 ORTHO05D007944 1.9e-08 63.2 78 44.9
Phvul.005G106200 Phaseolus vulgaris HOM05D006722 ORTHO05D007944 7.2e-08 61.2 160 41.9
QL08p037794 Quercus lobata HOM05D006722 ORTHO05D007944 1.2e-07 60.5 130 40.8
Potri.013G144200 Populus trichocarpa HOM05D006722 ORTHO05D007944 2.1e-07 59.7 120 41.7
Actinidia11070 Actinidia chinensis HOM05D006722 ORTHO05D007944 3.6e-07 58.9 61 50.8
Sabra13G0116200 Salix brachista HOM05D006722 ORTHO05D007944 3.6e-07 58.9 112 42.9
Actinidia01434 Actinidia chinensis HOM05D006722 ORTHO05D054353 6.1e-07 58.2 76 59.2
Cpa.g.sc34.125 Carica papaya HOM05D006722 ORTHO05D007944 1.0e-06 57.4 182 29.7
Lalb_Chr19g0135361 Lupinus albus HOM05D006722 ORTHO05D007944 3.0e-06 55.8 126 36.5
Hma1.2p1_0875F.1_g231430 Hydrangea macrophylla HOM05D006722 ORTHO05D007944 5.1e-06 55.1 101 38.6
Os07g0565800 Oryza sativa ssp. japonica HOM05D026263 ORTHO05D007944 8.7e-06 54.3 85 40.0


User provided reference genes

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