Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 2273.8 1184 100.0
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1822.0 1197 81.2
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1812.7 1196 80.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1755.7 1197 78.5
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1724.1 1345 72.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1634.8 1205 72.7
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1625.9 1214 71.8
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1621.3 1246 70.8
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1595.9 1220 71.6
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1577.0 1218 70.4
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1574.3 1203 71.0
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1569.3 1208 71.0
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1565.8 1202 70.5
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1565.1 1247 69.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1564.7 1218 69.9
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1564.7 1202 70.7
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1562.0 1193 70.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1559.7 1212 69.3
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1557.7 1212 70.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1557.7 1218 69.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1555.0 1207 69.9
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1554.3 1203 69.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1552.7 1202 69.9
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1551.2 1209 69.6
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1546.9 1204 70.0
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1544.3 1212 70.0
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1543.9 1211 70.3
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.2 1212 69.9
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1215 69.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1535.4 1174 71.1
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1533.1 1198 69.5
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1510.7 1204 68.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1508.4 1215 69.1
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1507.7 1142 70.7
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1504.6 1156 69.7
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1500.0 1144 70.0
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1499.6 1222 68.4
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1210 67.2
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1491.5 1209 66.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1484.5 1229 67.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1475.3 1212 67.6
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1472.6 1144 69.6
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1472.2 1214 66.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1467.6 1205 65.8
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1462.6 1210 66.9
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1460.7 1226 65.3
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1460.3 1201 66.4
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1456.4 1210 66.7
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1454.1 1238 66.5
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1452.6 1210 66.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1452.6 1226 65.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1449.9 1226 64.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1449.5 1207 65.3
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1210 66.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1447.6 1213 66.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1444.5 1226 64.8
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1212 66.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1211 66.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1235 65.2
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1438.3 1202 65.8
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1228 66.3
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1437.2 1206 65.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1430.6 1194 66.2
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1428.7 1195 66.4
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1178 66.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1424.8 1240 64.6
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1424.1 1212 64.7
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1424.1 1253 64.0
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1423.7 1253 64.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1423.7 1253 64.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1421.0 1211 65.2
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1421.0 1210 65.5
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1417.5 1190 66.2
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1413.3 1023 72.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1211 65.0
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1195 65.6
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1410.6 1148 66.3
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1403.3 1211 64.6
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1403.3 1211 64.6
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1400.2 1134 67.3
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1394.0 1151 67.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1392.5 1198 64.9
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1389.4 1167 66.6
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1386.7 1205 64.1
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1233 62.9
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1382.5 1406 57.1
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1380.9 1205 63.7
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1372.5 1205 63.9
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1366.3 1196 63.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1359.0 1179 64.9
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1149 66.1
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1349.0 1231 62.1
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1343.6 1076 67.7
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1184 63.2
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1298.5 1138 64.2
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1238.0 1124 61.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1213.4 1068 62.5
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1150.6 756 82.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1145.2 1189 57.3
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1124.8 974 65.1
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1116.3 1200 55.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1115.1 1193 54.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1105.9 833 72.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 9.2e-298 1027.3 1189 51.6
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.2e-286 990.3 1230 50.5
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 4.6e-281 971.8 1132 49.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.5e-260 902.1 636 73.7
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 6.7e-256 888.3 740 65.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 1.1e-255 887.5 947 52.5
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.2e-254 881.7 680 69.9
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 7.9e-241 838.2 615 71.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.9e-239 833.6 1241 42.8
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-235 820.1 674 66.0
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.2e-234 815.8 596 73.0
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.3e-230 802.0 1239 42.3
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 9.1e-229 798.1 669 63.5
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.3e-213 745.7 696 60.9
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.5e-211 738.8 1151 41.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 2.5e-210 736.9 689 61.1
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.5e-202 711.1 600 65.2
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.8e-198 696.0 521 70.1
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.4e-181 641.3 1139 37.8
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.1e-178 631.7 453 73.7
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.5e-175 619.0 455 72.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 5.4e-165 586.3 430 72.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 8.7e-147 525.8 1510 30.1
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.3e-123 448.7 401 65.3
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.3e-123 448.0 384 67.4
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 2.0e-103 381.7 428 51.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 4.4e-98 364.0 355 61.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 9.1e-96 356.3 484 49.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 4.0e-91 340.9 311 60.1
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.2e-89 335.1 255 71.8
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-82 310.1 294 58.8
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-78 298.5 383 48.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 6.3e-73 280.4 263 58.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 8.3e-73 280.0 384 45.3
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.3e-69 267.7 202 72.3
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.8e-68 265.0 240 60.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 2.5e-53 215.3 168 71.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 3.6e-52 211.5 124 85.5
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.8e-51 209.1 159 70.4
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-49 203.0 211 54.5
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 6.4e-49 200.7 179 55.9
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-48 199.9 209 54.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.2e-48 196.8 209 53.6
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-47 196.1 205 54.6
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.4e-41 173.7 280 42.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.4e-40 171.0 134 61.2
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-38 166.4 130 61.5
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.9e-37 162.5 130 60.8
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.5e-37 162.2 150 54.0
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.6e-37 161.0 135 67.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-30 138.3 111 59.5
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 3.9e-30 138.3 110 61.8
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-23 116.3 97 59.8
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.6e-23 114.8 91 75.8
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.0e-23 114.4 92 75.0
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 7.4e-21 107.5 234 37.2
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-20 106.3 174 43.1
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-19 103.2 62 79.0
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.0e-18 99.4 87 71.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 4.2e-16 91.7 57 82.5
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.6e-15 88.2 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.3e-14 86.7 249 29.3
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 3.7e-12 78.6 96 40.6
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.7e-12 78.6 106 51.9
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.4e-11 75.9 132 43.9
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 9.3e-08 63.9 72 50.0
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 7.9e-07 60.8 125 42.4
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 6.7e-06 57.8 108 42.6
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 8.7e-06 57.4 58 65.5


User provided reference genes

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