Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.6e-141 503.8 256 100.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-140 501.5 256 99.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.1e-91 340.5 255 74.9
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.3e-91 339.0 218 83.0
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 4.7e-90 335.1 266 71.1
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-89 334.0 253 74.3
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-87 326.2 218 80.3
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.8e-81 304.7 185 84.9
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 5.8e-80 301.6 248 68.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 3.2e-78 295.8 178 84.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.2e-78 294.3 166 86.1
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.2e-77 293.9 162 91.4
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.7e-77 292.7 219 72.6
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 2.3e-76 289.7 212 73.6
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.9e-76 288.9 165 87.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.9e-76 288.9 215 72.6
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 8.6e-76 287.7 216 70.8
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.1e-75 287.3 165 88.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.5e-75 286.2 191 77.0
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.5e-75 286.2 178 80.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.3e-75 285.4 213 71.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.6e-75 285.0 225 67.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.6e-74 283.5 214 71.5
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.6e-74 283.5 225 66.7
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.6e-74 283.5 225 66.7
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.1e-74 283.1 226 67.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.1e-74 283.1 224 67.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 2.8e-74 282.7 211 72.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.6e-74 282.3 235 67.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.6e-74 282.3 165 85.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 6.2e-74 281.6 165 85.5
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.2e-74 281.6 203 73.4
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.2e-74 281.6 203 73.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 8.0e-74 281.2 229 66.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.1e-73 280.8 165 85.5
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-73 280.8 222 68.0
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.4e-73 280.4 173 80.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 2.3e-73 279.6 192 74.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.3e-73 279.6 168 82.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.3e-73 279.6 217 68.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 3.1e-73 279.3 165 84.8
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 3.1e-73 279.3 165 81.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 5.2e-73 278.5 166 80.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 6.8e-73 278.1 164 83.5
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 6.8e-73 278.1 228 66.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 6.8e-73 278.1 213 69.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 8.9e-73 277.7 227 65.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 8.9e-73 277.7 168 83.3
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 8.9e-73 277.7 245 64.1
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-72 277.3 178 77.5
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-72 277.3 226 66.4
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.2e-72 277.3 166 81.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.2e-72 277.3 218 67.0
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-72 276.9 222 66.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-72 275.8 222 65.3
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-72 275.8 160 83.1
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.4e-72 275.8 226 66.4
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 3.4e-72 275.8 225 67.6
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-72 275.8 157 88.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.8e-72 275.0 176 78.4
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 5.8e-72 275.0 226 68.1
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 7.5e-72 274.6 218 67.0
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 9.8e-72 274.2 223 67.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.8e-72 274.2 161 82.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 9.8e-72 274.2 223 67.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 9.8e-72 274.2 219 66.2
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 9.8e-72 274.2 214 69.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.3e-71 273.9 169 80.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.7e-71 273.5 158 84.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.9e-71 272.7 207 67.1
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.9e-71 272.7 165 82.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 8.3e-71 271.2 230 64.3
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.1e-70 270.8 227 67.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-70 270.4 157 86.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.4e-70 270.4 146 91.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 3.2e-70 269.2 165 82.4
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 5.4e-70 268.5 162 82.1
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.0e-70 268.1 246 62.2
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-69 267.3 232 63.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.6e-69 266.9 221 67.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.6e-69 266.9 220 63.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.7e-69 266.2 165 81.2
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.7e-69 266.2 165 81.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.5e-69 265.8 214 65.9
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.5e-69 265.8 164 79.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.5e-69 265.8 227 63.4
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.6e-69 265.4 213 68.5
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 4.6e-69 265.4 227 63.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 6.0e-69 265.0 166 78.3
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 6.0e-69 265.0 164 81.1
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.0e-68 264.2 165 78.2
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.3e-68 263.8 213 65.3
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-68 263.8 213 68.1
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.3e-68 263.8 164 79.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.7e-68 263.5 220 63.2
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 2.3e-68 263.1 220 62.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.1e-68 261.9 221 61.5
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 4.3e-67 258.8 208 66.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.6e-66 256.9 192 69.3
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.8e-66 256.1 196 68.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 4.7e-66 255.4 164 75.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 6.2e-66 255.0 216 63.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 6.2e-66 255.0 190 70.5
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 8.1e-66 254.6 180 70.6
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 8.1e-66 254.6 203 68.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.8e-65 253.4 213 65.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.0e-65 252.3 139 89.2
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 5.2e-65 251.9 170 73.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 6.8e-65 251.5 142 88.7
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 6.8e-65 251.5 154 82.5
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.0e-64 250.0 167 74.3
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.0e-64 250.0 176 72.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.0e-64 250.0 155 81.3
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.0e-64 250.0 165 75.8
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 5.8e-64 248.4 177 71.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.9e-63 245.4 189 70.9
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.9e-63 245.4 241 59.3
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.9e-62 243.4 191 68.1
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.4e-62 243.0 166 73.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 5.4e-62 241.9 214 64.0
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 4.6e-61 238.8 170 70.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.8e-61 238.0 219 60.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.3e-60 237.3 217 60.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.5e-59 233.0 139 84.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 9.5e-59 231.1 244 56.6
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.7e-58 228.8 127 87.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-57 227.6 155 68.4
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.4e-57 227.3 133 85.7
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.4e-57 227.3 158 68.4
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.4e-57 226.5 178 64.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.4e-56 222.2 139 77.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.7e-55 220.3 198 58.1
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.4e-55 218.4 127 81.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 7.8e-53 211.5 132 78.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-50 203.8 170 64.1
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.6e-50 202.6 133 75.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.4e-48 195.7 194 59.3
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.4e-48 195.7 219 51.1
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 3.8e-47 192.6 192 59.9
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 4.9e-47 192.2 119 82.4
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-46 190.7 175 62.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.2e-46 189.5 118 80.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 9.3e-46 188.0 164 56.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 7.8e-45 184.9 141 60.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 8.7e-44 181.4 106 84.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.3e-41 172.2 97 81.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-40 169.9 172 57.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.4e-38 163.3 97 79.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-37 161.0 183 48.6
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-33 147.9 77 93.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.1e-33 146.4 139 51.1
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 4.0e-33 146.0 137 59.9
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.9e-33 145.2 77 92.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 9.9e-32 141.4 74 89.2
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.8e-31 139.4 85 84.7
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-25 121.3 99 64.6
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 9.0e-25 118.2 80 72.5
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-23 114.0 97 61.9
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.4e-22 110.9 117 56.4
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.5e-22 110.2 118 50.8
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 3.7e-18 96.3 70 67.1
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-17 93.6 47 91.5
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-15 85.9 52 84.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-14 84.0 52 76.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-14 83.2 42 92.9
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.2e-14 82.8 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 2.7e-13 80.1 125 44.8
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.8e-10 70.1 37 86.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.4e-09 67.8 158 39.2
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-07 60.5 32 87.5
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 3.8e-07 59.7 91 37.4
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-06 57.8 32 90.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-06 55.8 40 72.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-06 55.8 40 72.5


User provided reference genes

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