Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-94 349.7 184 100.0
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.9e-94 348.2 184 99.5
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.2e-91 337.8 184 96.7
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.2e-76 287.7 188 82.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.4e-74 282.0 176 84.7
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.9e-73 278.9 190 78.4
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.2e-72 275.4 193 77.7
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 9.2e-72 273.9 184 77.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.2e-72 273.9 193 77.2
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.6e-71 273.1 192 76.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.7e-71 272.3 155 89.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.5e-71 271.9 195 76.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 4.6e-71 271.6 193 76.2
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 7.8e-71 270.8 193 75.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.0e-70 270.4 193 76.2
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.3e-70 270.0 197 72.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.7e-70 269.6 193 76.2
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.7e-70 269.6 182 78.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.3e-70 269.2 188 76.6
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.0e-70 268.9 191 75.9
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.9e-70 268.5 193 75.6
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.1e-70 268.1 193 75.6
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.6e-70 267.7 189 73.5
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 6.6e-70 267.7 193 75.6
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 6.6e-70 267.7 176 80.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.1e-69 266.9 190 75.8
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.5e-69 266.5 193 75.1
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.5e-69 266.5 182 77.5
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.9e-69 266.2 181 76.2
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.3e-69 265.4 188 76.6
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 3.3e-69 265.4 182 74.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.6e-69 264.6 197 72.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 5.6e-69 264.6 192 75.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 9.6e-69 263.8 193 73.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.6e-68 263.1 158 83.5
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.6e-68 263.1 193 74.6
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.1e-68 262.7 193 74.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.1e-68 262.7 190 75.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.6e-68 261.9 187 75.4
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.7e-68 261.5 191 72.8
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 4.7e-68 261.5 193 74.1
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-67 260.4 197 71.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-67 260.4 193 71.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.1e-67 260.4 193 71.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.4e-67 260.0 190 73.7
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.1e-67 258.8 187 74.9
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.1e-67 258.8 188 73.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.2e-67 258.1 175 78.9
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.8e-67 257.7 185 72.4
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.5e-66 256.5 195 71.3
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 2.0e-66 256.1 165 78.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.6e-66 255.8 180 75.6
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 3.4e-66 255.4 202 68.8
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 3.4e-66 255.4 202 68.8
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.4e-66 255.4 202 68.8
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 4.4e-66 255.0 194 73.2
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 4.4e-66 255.0 196 73.0
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.4e-66 255.0 186 74.2
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 5.8e-66 254.6 191 73.3
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 9.9e-66 253.8 167 76.0
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 9.9e-66 253.8 186 72.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.2e-65 252.7 191 69.6
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.8e-65 251.9 171 78.4
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 8.4e-65 250.8 183 73.8
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.1e-64 250.4 182 72.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.4e-64 250.0 192 70.3
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.9e-64 249.6 183 73.2
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.9e-64 249.6 188 72.3
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.4e-64 249.2 194 71.6
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 3.2e-64 248.8 153 82.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 7.1e-64 247.7 191 69.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 7.1e-64 247.7 198 66.7
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 7.1e-64 247.7 187 70.1
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 7.1e-64 247.7 191 72.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 9.3e-64 247.3 169 74.6
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 9.3e-64 247.3 183 72.1
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.2e-63 246.9 193 68.9
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.2e-63 246.9 187 70.1
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.7e-63 245.7 166 74.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 3.5e-63 245.4 163 75.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.5e-63 245.4 182 70.9
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.3e-62 243.4 171 74.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.3e-62 243.4 160 78.1
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-62 243.0 163 75.5
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 3.0e-62 242.3 194 66.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 5.1e-62 241.5 163 74.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 6.6e-62 241.1 185 68.1
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.5e-61 240.0 160 76.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.5e-61 240.0 178 69.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.5e-61 240.0 160 76.9
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.5e-61 240.0 160 78.1
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 2.5e-61 239.2 187 68.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.5e-61 239.2 194 69.6
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.3e-61 238.8 192 67.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.3e-61 238.8 196 66.8
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.3e-61 238.4 158 75.3
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.3e-61 238.4 184 71.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.6e-61 238.0 163 74.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.6e-61 238.0 184 69.6
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.3e-60 236.9 190 66.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 4.8e-60 235.0 186 66.7
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.1e-59 233.8 193 65.8
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 5.3e-59 231.5 194 65.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 6.9e-59 231.1 193 66.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 9.0e-59 230.7 175 72.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.5e-58 229.9 162 73.5
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-58 229.9 179 70.4
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 5.8e-58 228.0 193 66.3
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.8e-58 228.0 185 65.9
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 9.9e-58 227.3 187 64.2
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 9.9e-58 227.3 187 66.8
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.7e-57 226.5 188 67.6
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.8e-57 225.3 208 63.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 7.1e-56 221.1 178 65.2
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 7.1e-56 221.1 193 62.2
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.6e-55 218.4 196 66.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.3e-54 216.9 193 62.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.7e-54 216.5 167 65.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.1e-52 209.5 141 75.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.6e-52 208.8 163 68.1
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.1e-51 207.2 186 61.8
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.1e-51 207.2 185 62.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.4e-51 206.8 187 62.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 6.9e-51 204.5 241 51.9
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.1e-48 197.2 156 68.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.1e-47 193.0 171 63.7
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 6.7e-46 188.0 150 68.0
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.8e-44 181.8 150 62.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 8.1e-44 181.0 239 51.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.4e-43 179.5 184 60.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 4.0e-43 178.7 167 60.5
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.0e-41 174.1 191 55.5
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.2e-41 172.9 191 55.0
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.8e-41 172.2 111 77.5
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.4e-41 171.0 137 68.6
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.2e-40 169.1 104 78.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 4.2e-40 168.7 132 65.2
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.5e-40 168.3 173 57.8
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.5e-37 160.2 156 52.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.9e-37 159.8 152 61.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.1e-35 154.1 144 53.5
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.0e-35 151.0 126 61.9
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-33 147.5 127 63.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.7e-33 146.7 158 51.9
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.2e-33 146.4 127 63.8
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-33 145.6 127 63.0
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.5e-32 141.7 127 63.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 9.3e-32 141.0 93 73.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.1e-31 139.8 97 72.2
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 7.9e-31 137.9 135 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.8e-30 136.7 172 44.2
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.3e-30 136.3 82 79.3
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.0e-30 136.0 168 44.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-23 114.0 113 59.3
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 3.3e-21 105.9 184 42.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 5.0e-17 92.0 83 62.7
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-13 80.9 59 64.4
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.5e-10 68.9 104 48.1
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-09 67.0 48 75.0
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-08 63.5 134 39.6


User provided reference genes

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