Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.3e-37 157.9 82 100.0
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.3e-36 156.0 82 98.8
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.3e-29 131.0 82 85.4
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 8.7e-22 106.7 82 68.3
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 8.7e-22 106.7 82 74.4
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 8.1e-20 100.1 82 63.4
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 3.1e-19 98.2 82 64.6
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 1.7e-17 92.4 82 59.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 2.5e-16 88.6 82 62.2
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 7.1e-16 87.0 82 58.5
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.6e-15 85.9 82 59.8
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.0e-14 83.2 82 61.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.3e-14 82.8 82 53.7
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 5.1e-14 80.9 77 61.0
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 5.1e-14 80.9 82 58.5
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.1e-13 79.7 82 58.5
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.1e-13 79.7 82 58.5
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.5e-13 79.3 82 52.4
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.5e-13 79.3 82 53.7
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 2.5e-13 78.6 82 57.3
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 2.5e-13 78.6 82 58.5
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.3e-13 77.8 82 51.2
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 4.3e-13 77.8 81 49.4
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 4.3e-13 77.8 82 53.7
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 5.7e-13 77.4 82 51.2
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 5.7e-13 77.4 82 52.4
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 5.7e-13 77.4 85 49.4
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 9.6e-13 76.6 82 52.4
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 9.6e-13 76.6 82 51.2
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.3e-12 76.3 82 52.4
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.6e-12 75.9 82 52.4
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.6e-12 75.9 82 51.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 2.1e-12 75.5 82 51.2
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 2.1e-12 75.5 82 50.0
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 2.8e-12 75.1 73 60.3
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 3.7e-12 74.7 81 54.3
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 4.8e-12 74.3 82 51.2
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 6.2e-12 73.9 85 47.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.1e-11 73.2 82 51.2
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 1.1e-11 73.2 82 50.0
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 1.4e-11 72.8 82 51.2
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 3.1e-11 71.6 82 54.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 5.3e-11 70.9 82 48.8
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 6.9e-11 70.5 77 53.2
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 1.2e-10 69.7 82 51.2
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.2e-10 69.7 82 46.3
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 1.2e-10 69.7 80 51.2
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.5e-10 69.3 82 48.8
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.5e-10 69.3 72 51.4
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.0e-10 68.9 77 51.9
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 2.0e-10 68.9 82 48.8
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 5.8e-10 67.4 84 48.8
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 7.6e-10 67.0 83 47.0
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 1.0e-09 66.6 82 47.6
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.7e-09 65.9 82 45.1
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 3.8e-09 64.7 82 47.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 6.5e-09 63.9 83 45.8
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 6.5e-09 63.9 81 45.7
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.5e-09 63.9 81 45.7
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 6.5e-09 63.9 81 43.2
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 8.4e-09 63.5 82 48.8
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 8.4e-09 63.5 82 46.3
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.4e-08 62.8 81 44.4
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.4e-08 62.8 75 53.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.9e-08 62.4 79 45.6
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.9e-08 62.4 82 45.1
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.9e-08 62.4 82 43.9
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 1.9e-08 62.4 86 46.5
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.5e-08 62.0 81 44.4
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.5e-08 62.0 82 43.9
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 5.5e-08 60.8 82 45.1
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.5e-08 60.8 82 43.9
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 7.1e-08 60.5 82 43.9
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 9.3e-08 60.1 38 71.1
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 1.2e-07 59.7 79 44.3
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.6e-07 59.3 71 50.7
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 4.6e-07 57.8 82 45.1
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 4.6e-07 57.8 68 51.5
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 4.6e-07 57.8 68 51.5
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 7.9e-07 57.0 71 50.7
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.0e-06 56.6 77 42.9
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.8e-06 55.8 82 42.7
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 5.1e-06 54.3 38 71.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 6.7e-06 53.9 38 63.2
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 6.7e-06 53.9 77 41.6


User provided reference genes

Program Settings