Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036442 Camellia sinensis var. sinensis HOM05D002586 ORTHO05D007521 2.4e-84 315.5 157 100.0
CSS0041277 Camellia sinensis var. sinensis HOM05D002586 ORTHO05D007521 1.6e-56 223.0 141 81.6
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 6.9e-52 207.6 152 71.1
Hma1.2p1_1968F.1_g309470 Hydrangea macrophylla HOM05D002586 ORTHO05D007521 7.2e-49 197.6 137 73.0
Prupe.7G227000 Prunus persica HOM05D000417 ORTHO05D000342 1.0e-47 193.7 137 70.1
Cfa003292 Carpinus fangiana HOM05D000417 ORTHO05D000342 1.8e-47 193.0 137 72.3
MD02G1062400 Malus domestica HOM05D002586 ORTHO05D007521 3.0e-47 192.2 137 70.8
vmacro06194 Vaccinium macrocarpon HOM05D002586 ORTHO05D007521 6.7e-47 191.0 109 83.5
QL02p086119 Quercus lobata HOM05D002586 ORTHO05D007521 1.1e-46 190.3 137 70.1
RcHm_v2.0_Chr2g0091071 Rosa chinensis HOM05D002586 ORTHO05D007521 4.4e-46 188.3 137 69.3
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 7.4e-46 187.6 106 84.0
CiPaw.03G235200 Carya illinoinensis HOM05D002586 ORTHO05D007521 9.7e-46 187.2 137 69.3
CANSAT56G1449 Cannabis sativa HOM05D002586 ORTHO05D007521 1.7e-45 186.4 137 65.7
Rhsim03G0244900 Rhododendron simsii HOM05D002586 ORTHO05D007521 1.7e-45 186.4 109 80.7
PGR142G2078 Punica granatum HOM05D002586 ORTHO05D007521 2.8e-45 185.7 137 66.4
Nn7g36037 Nelumbo nucifera HOM05D002586 ORTHO05D007521 1.4e-44 183.3 136 65.4
Duzib187G1530 Durio zibethinus HOM05D002586 ORTHO05D007521 2.4e-44 182.6 137 66.4
TPR.G26750 Trifolium pratense HOM05D002586 ORTHO05D007521 3.1e-44 182.2 137 65.0
Thecc.09G114900 Theobroma cacao HOM05D002586 ORTHO05D007521 2.0e-43 179.5 137 64.2
TAR383G0369 Trochodendron aralioides HOM05D002586 ORTHO05D007521 2.0e-43 179.5 105 77.1
Lj7A641G79 Lonicera japonica HOM05D002586 ORTHO05D007521 2.6e-43 179.1 105 77.1
FAN19G1865 Fragaria x ananassa HOM05D002586 ORTHO05D007521 3.4e-43 178.7 106 78.3
Oeu034436.1 Olea europaea HOM05D000066 ORTHO05D000055 3.4e-43 178.7 137 65.7
Gohir.D06G058900 Gossypium hirsutum HOM05D002586 ORTHO05D007521 4.5e-43 178.3 137 66.4
Gorai.010G068800 Gossypium raimondii HOM05D000417 ORTHO05D000342 4.5e-43 178.3 137 66.4
Manes.03G068300 Manihot esculenta HOM05D002586 ORTHO05D007521 5.9e-43 177.9 137 63.5
Ciclev10007363m.g Citrus clementina HOM05D000417 ORTHO05D000342 7.7e-43 177.6 150 60.0
Gohir.A06G060550 Gossypium hirsutum HOM05D000417 ORTHO05D007521 7.7e-43 177.6 137 66.4
HanXRQChr10g0317371 Helianthus annuus HOM05D002586 ORTHO05D007521 7.7e-43 177.6 137 64.2
Lsat_1_v5_gn_5_99861 Lactuca sativa HOM05D002586 ORTHO05D007521 7.7e-43 177.6 105 78.1
FAN23G1201 Fragaria x ananassa HOM05D000417 ORTHO05D007521 1.0e-42 177.2 105 78.1
Psat4g043160 Pisum sativum HOM05D002586 ORTHO05D007521 1.3e-42 176.8 105 75.2
GSVIVG01015435001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.3e-42 176.8 148 60.8
Sed0019430 Sechium edule HOM05D002586 ORTHO05D007521 2.9e-42 175.6 137 62.8
FAN26G0906 Fragaria x ananassa HOM05D002586 ORTHO05D007521 3.8e-42 175.3 105 78.1
FAN26G3367 Fragaria x ananassa HOM05D002586 ORTHO05D007521 3.8e-42 175.3 105 78.1
Lj4g0022349 Lotus japonicus HOM05D002586 ORTHO05D007521 3.8e-42 175.3 158 57.6
Atru.chr7.1294 Acer truncatum HOM05D000417 ORTHO05D000342 5.0e-42 174.9 137 64.2
Ca_02541_v3 Cicer arietinum L. HOM05D002586 ORTHO05D007521 5.0e-42 174.9 105 75.2
Potri.018G072200 Populus trichocarpa HOM05D002586 ORTHO05D007521 5.0e-42 174.9 137 62.8
Hund26118 Selenicereus undatus HOM05D002586 ORTHO05D007521 5.0e-42 174.9 137 62.8
TWI34G1303 Tripterygium wilfordii HOM05D002586 ORTHO05D007521 6.5e-42 174.5 137 65.0
arahy.Tifrunner.gnm1.ann1.7815EC Arachis hypogaea HOM05D002586 ORTHO05D007521 1.1e-41 173.7 137 64.2
Sc18g0001020 Simmondsia chinensis HOM05D002586 ORTHO05D007521 1.1e-41 173.7 137 61.3
FvH4_1g05380 Fragaria vesca HOM05D002586 ORTHO05D007521 1.4e-41 173.3 108 75.9
Glyma.05G012700 Glycine max HOM05D002586 ORTHO05D007521 1.4e-41 173.3 137 62.8
Medtr4g112015 Medicago truncatula HOM05D002586 ORTHO05D007521 1.4e-41 173.3 105 75.2
ECA234G2455 Erigeron canadensis HOM05D000417 ORTHO05D007521 3.2e-41 172.2 136 61.8
Sabra18G0064400 Salix brachista HOM05D002586 ORTHO05D007521 3.2e-41 172.2 137 60.6
arahy.Tifrunner.gnm1.ann1.79CRDV Arachis hypogaea HOM05D002586 ORTHO05D007521 4.2e-41 171.8 105 76.2
Glyma.17G120833 Glycine max HOM05D002586 ORTHO05D007521 7.2e-41 171.0 139 60.4
THA.LOC104811104 Tarenaya hassleriana HOM05D002586 ORTHO05D007521 7.2e-41 171.0 137 61.3
AUR62011030 Chenopodium quinoa HOM05D002586 ORTHO05D007521 1.2e-40 170.2 105 71.4
Lalb_Chr08g0235011 Lupinus albus HOM05D002586 ORTHO05D007521 1.2e-40 170.2 137 59.9
Thhalv10005971m.g Eutrema salsugineum HOM05D002586 ORTHO05D007521 1.6e-40 169.9 105 74.3
Lalb_Chr21g0316611 Lupinus albus HOM05D002586 ORTHO05D007521 2.1e-40 169.5 137 60.6
EL10Ac8g18544 Beta vulgaris HOM05D002586 ORTHO05D007521 3.6e-40 168.7 105 70.5
MELO3C004542.2 Cucumis melo HOM05D002586 ORTHO05D007521 4.7e-40 168.3 105 73.3
Cpa.g.sc23.142 Carica papaya HOM05D002586 ORTHO05D007521 6.1e-40 167.9 99 79.8
CsaV3_2G002470 Cucumis sativus L. HOM05D002586 ORTHO05D007521 6.1e-40 167.9 137 60.6
AT3G56120 Arabidopsis thaliana HOM05D002586 ORTHO05D007521 7.9e-40 167.5 137 60.6
CAN.G444.6 Capsicum annuum HOM05D002586 ORTHO05D007521 1.4e-39 166.8 136 63.2
AL5G37440 Arabidopsis lyrata HOM05D002586 ORTHO05D007521 1.8e-39 166.4 137 59.1
PSO170G5904 Papaver somniferum HOM05D002586 ORTHO05D007521 1.8e-39 166.4 137 58.4
Sp5g06410 Schrenkiella parvula HOM05D002586 ORTHO05D007521 1.8e-39 166.4 105 72.4
arahy.Tifrunner.gnm1.ann1.0DQ71P Arachis hypogaea HOM05D002586 ORTHO05D007521 2.3e-39 166.0 105 72.4
Cc10_g11950 Coffea canephora HOM05D002586 ORTHO05D007521 2.3e-39 166.0 135 60.7
MBI01_g20396_MAGBIO Magnolia biondii HOM05D002586 ORTHO05D007521 2.3e-39 166.0 105 70.5
arahy.Tifrunner.gnm1.ann1.QVF5JZ Arachis hypogaea HOM05D002586 ORTHO05D007521 3.0e-39 165.6 105 74.3
HanXRQChr12g0355841 Helianthus annuus HOM05D002586 ORTHO05D007521 3.9e-39 165.2 137 59.9
ClCG11G002640 Citrullus lanatus HOM05D002586 ORTHO05D007521 6.7e-39 164.5 151 57.6
DCAR_028731 Daucus carota HOM05D002250 ORTHO05D007521 1.5e-38 163.3 135 62.2
Migut.D02058 Erythranthe guttata HOM05D002586 ORTHO05D007521 3.3e-38 162.2 137 59.1
BcaB01g00029 Brassica carinata HOM05D002586 ORTHO05D007521 5.7e-38 161.4 105 70.5
PSO210G4513 Papaver somniferum HOM05D002586 ORTHO05D007521 5.7e-38 161.4 137 57.7
Peaxi162Scf00560g00619 Petunia axillaris HOM05D002586 ORTHO05D007521 1.3e-37 160.2 135 59.3
Solyc05g006200.4 Solanum lycopersicum HOM05D002586 ORTHO05D007521 1.3e-37 160.2 136 59.6
Aa31LG10G11030 Aethionema arabicum HOM05D002586 ORTHO05D007521 4.8e-37 158.3 105 70.5
ATR0605G072 Amborella trichopoda HOM05D002586 ORTHO05D007521 4.8e-37 158.3 140 56.4
SGA_v2.0_scaffold1G00550 Striga asiatica HOM05D002586 ORTHO05D007521 4.8e-37 158.3 137 56.9
A09p49100 Brassica napus HOM05D002586 ORTHO05D007521 1.1e-36 157.1 105 69.5
BraA09t40362Z Brassica rapa HOM05D002586 ORTHO05D007521 1.1e-36 157.1 105 69.5
arahy.Tifrunner.gnm1.ann1.LVY3P8 Arachis hypogaea HOM05D002586 ORTHO05D007521 1.8e-36 156.4 118 66.1
CDE05G1108 Ceratophyllum demersum HOM05D002586 ORTHO05D007521 1.8e-36 156.4 137 56.9
PGSC0003DMG401015580 Solanum tuberosum HOM05D002586 ORTHO05D007521 3.5e-35 152.1 99 71.7
BcaC07g39927 Brassica carinata HOM05D002586 ORTHO05D007521 5.0e-34 148.3 138 55.8
C08p31420 Brassica napus HOM05D002586 ORTHO05D007521 5.0e-34 148.3 138 55.8
BolC8t50763H Brassica oleracea HOM05D002586 ORTHO05D007521 5.0e-34 148.3 138 55.8
Os02g0606300 Oryza sativa ssp. japonica HOM05D002586 ORTHO05D007521 8.5e-34 147.5 139 53.2
Nitab4.5_0000066g0020 Nicotiana tabacum HOM05D002586 ORTHO05D007521 6.1e-32 141.4 104 66.3
Nitab4.5_0000005g0480 Nicotiana tabacum HOM05D002586 ORTHO05D007521 1.4e-31 140.2 104 66.3
SEGI_20865 Sequoiadendron giganteum HOM05D002586 ORTHO05D007521 1.8e-31 139.8 140 47.1
Actinidia32694 Actinidia chinensis HOM05D002586 ORTHO05D007521 3.0e-31 139.0 126 61.1
Zm00001eb184100 Zea mays HOM05D002586 ORTHO05D007521 3.0e-31 139.0 139 51.1
SalBow1G1951 Salvia bowleyana HOM05D002586 ORTHO05D007521 1.2e-30 137.1 105 61.9
Aqoxy4G02394 Aquilegia oxysepala HOM05D002586 ORTHO05D007521 3.3e-30 135.6 137 49.6
HPP92_026033 Vanilla planifolia HOM05D002586 ORTHO05D007521 2.8e-29 132.5 159 44.7
unitig_46.g18492 Utricularia gibba HOM05D002586 ORTHO05D007521 2.4e-28 129.4 105 57.1
arahy.Tifrunner.gnm1.ann1.4YWE6A Arachis hypogaea HOM05D002586 ORTHO05D007521 1.8e-23 113.2 72 75.0
SGA_v2.0_scaffold42G16128 Striga asiatica HOM05D002586 ORTHO05D007521 2.3e-23 112.8 106 55.7
Duzib168G1197 Durio zibethinus HOM05D002586 ORTHO05D007521 8.8e-23 110.9 95 64.2
COL.COLO4_34935 Corchorus olitorius HOM05D002586 ORTHO05D007521 1.2e-22 110.5 63 82.5
SHI02609 Sapria himalayana HOM05D002586 ORTHO05D007521 1.4e-20 103.6 67 71.6
SMO141G0090 Selaginella moellendorffii HOM05D002586 ORTHO05D007521 4.5e-19 98.6 136 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2815 Anthoceros agrestis HOM05D002586 ORTHO05D007521 1.6e-16 90.1 137 38.0
Pp3c17_17170 Physcomitrium patens HOM05D002586 ORTHO05D007521 3.7e-13 79.0 136 32.4
Eucgr.C01077 Eucalyptus grandis HOM05D002586 ORTHO05D007521 7.0e-12 74.7 42 76.2
Mapoly0022s0148 Marchantia polymorpha HOM05D002586 ORTHO05D007521 7.0e-12 74.7 137 30.7
Hund14754 Selenicereus undatus HOM05D002586 ORTHO05D007521 4.7e-08 62.0 77 42.9


User provided reference genes

Program Settings