Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 9.3e-234 813.1 406 100.0
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.6e-188 662.9 407 81.8
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.8e-168 596.3 411 73.2
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.4e-165 584.7 492 64.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.9e-162 576.2 483 65.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.4e-160 570.1 409 71.9
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 6.0e-156 554.7 412 70.4
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 6.8e-152 541.2 413 66.3
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 9.2e-149 530.8 411 67.4
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 2.1e-148 529.6 412 67.5
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 2.7e-148 529.3 412 66.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.1e-145 517.7 405 68.1
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.1e-144 515.8 408 64.5
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 3.1e-144 515.8 424 64.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.1e-144 515.8 405 68.1
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 7.6e-143 511.1 404 65.8
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-142 510.4 413 66.6
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 3.8e-142 508.8 404 65.3
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.4e-141 505.0 409 64.3
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.3e-141 504.2 409 64.3
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 3.5e-140 502.3 340 76.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.0e-139 500.7 431 64.3
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.3e-139 500.4 401 63.1
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.9e-139 498.8 407 63.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.9e-138 496.5 413 63.9
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 2.5e-138 496.1 401 62.8
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 4.3e-138 495.4 407 64.9
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.6e-138 495.0 407 63.4
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 5.6e-138 495.0 407 63.4
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-137 492.3 403 62.3
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 6.2e-137 491.5 403 63.3
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 2.4e-136 489.6 403 61.8
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 4.0e-136 488.8 324 72.8
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-135 486.9 343 69.4
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.5e-135 486.9 416 60.3
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.4e-135 485.7 409 60.9
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 4.5e-135 485.3 401 62.1
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 9.9e-135 484.2 401 62.1
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.7e-134 483.4 411 62.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 1.9e-133 479.9 474 57.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.9e-133 479.9 409 62.6
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.1e-132 476.5 406 61.3
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.7e-132 476.1 402 59.7
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.6e-132 475.3 314 74.2
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 7.9e-132 474.6 411 60.8
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.3e-131 473.0 321 70.7
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 3.0e-131 472.6 406 60.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 6.7e-131 471.5 377 63.4
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 8.7e-131 471.1 420 62.6
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.1e-130 470.7 331 71.6
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.3e-129 467.2 311 71.1
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.6e-129 466.8 318 69.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 3.7e-129 465.7 320 69.7
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 4.8e-129 465.3 316 75.3
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 6.2e-129 464.9 405 57.5
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 8.1e-129 464.5 404 58.7
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.4e-128 463.8 416 58.2
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.4e-128 463.8 364 63.5
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.4e-127 459.1 321 69.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 9.9e-127 457.6 394 59.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.2e-126 456.4 413 56.9
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-125 453.8 328 64.6
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.4e-125 453.8 405 56.8
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.9e-125 453.4 409 58.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 5.5e-125 451.8 406 57.6
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.6e-124 450.3 405 56.3
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.6e-124 450.3 375 60.5
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.0e-123 447.6 404 56.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.0e-123 447.6 404 55.0
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.8e-123 446.8 323 65.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.3e-123 446.4 407 57.2
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.3e-122 442.6 404 56.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.3e-122 442.6 404 56.7
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 9.6e-122 441.0 398 57.5
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.3e-121 440.7 411 56.2
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.8e-121 439.5 404 56.7
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.8e-121 439.5 404 55.4
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 6.2e-121 438.3 393 60.1
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 8.2e-121 438.0 398 57.8
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 4.0e-120 435.6 409 56.2
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 9.0e-120 434.5 404 56.4
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.2e-119 434.1 404 55.2
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.0e-119 433.3 411 55.2
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 4.5e-119 432.2 329 62.3
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-118 430.3 332 66.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.1e-117 427.6 403 54.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.5e-117 426.4 411 53.5
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.6e-116 423.7 341 64.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 3.5e-116 422.5 405 53.8
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.5e-116 422.5 402 53.7
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.7e-115 418.3 407 53.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 6.7e-115 418.3 328 62.8
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.5e-114 417.2 416 54.3
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 9.0e-112 407.9 404 51.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.9e-111 405.2 455 53.0
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 5.5e-109 398.7 397 53.9
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.6e-108 397.1 395 53.9
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.1e-108 396.7 315 61.0
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.5e-106 390.6 312 60.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 3.3e-106 389.4 394 54.3
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.1e-104 384.4 324 59.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.5e-103 380.6 351 55.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 8.5e-102 374.8 325 56.9
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 6.1e-100 368.6 319 55.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.4e-90 335.9 416 46.4
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 8.2e-89 331.6 308 54.9
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.1e-88 331.3 286 60.1
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.2e-86 323.6 314 54.8
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.1e-84 317.0 370 49.2
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.2e-82 311.2 354 53.4
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.7e-81 307.4 230 63.0
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.6e-76 290.8 283 52.7
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 3.6e-76 289.7 193 67.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 4.0e-75 286.2 321 50.2
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 3.6e-60 236.5 187 63.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 7.3e-53 212.2 315 39.4
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 8.1e-44 182.2 122 68.9
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.4e-43 181.4 133 64.7
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.2e-39 168.3 125 67.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.1e-39 167.5 181 47.0
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.8e-36 157.1 185 44.9
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.6e-36 156.8 309 32.7
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.4e-35 154.1 302 31.8
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.3e-30 137.5 94 76.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 6.6e-30 136.0 76 81.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.5e-29 134.8 102 70.6
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.1e-24 118.6 213 34.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.1e-24 118.6 148 39.2
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.9e-24 117.9 155 45.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.4e-24 116.3 96 66.7
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.6e-23 113.2 68 75.0
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.1e-22 109.8 111 53.2
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 4.3e-21 106.7 280 25.7
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 9.6e-21 105.5 125 47.2
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.1e-19 102.1 246 26.4
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.6e-18 97.4 73 71.2
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.0e-11 73.6 309 23.3
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 5.5e-08 63.2 181 30.9
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 5.5e-08 63.2 181 30.9
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.7e-07 60.8 46 58.7
Actinidia40232 Actinidia chinensis HOM05D005247 ORTHO05D057568 3.5e-07 60.5 48 62.5


User provided reference genes

Program Settings