Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1707.2 891 100.0
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1696.8 891 99.4
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1315.1 907 78.5
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1314.3 903 78.8
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1313.9 912 77.1
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1305.0 907 76.2
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1294.3 906 77.3
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1291.9 906 77.2
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 0.0e+00 1222.6 906 73.0
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 0.0e+00 1218.0 887 74.9
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1140.6 906 68.0
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1129.0 907 67.3
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 0.0e+00 1125.5 906 69.0
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1122.1 902 68.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 0.0e+00 1117.4 903 69.2
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1115.9 782 78.1
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1113.2 906 66.2
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1113.2 905 67.7
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1110.9 903 67.9
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 0.0e+00 1098.2 903 68.8
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1089.7 903 66.9
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 0.0e+00 1085.9 906 66.0
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 4.3e-311 1071.2 910 65.6
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.5e-311 1070.8 909 64.8
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.0e-309 1065.1 913 64.5
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 6.7e-309 1063.9 913 64.6
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.5e-308 1062.8 914 63.7
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.9e-308 1062.4 910 64.7
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.8e-307 1058.5 910 64.5
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 3.4e-305 1051.6 905 64.9
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 8.4e-304 1047.0 888 66.1
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 9.3e-303 1043.5 910 64.4
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.9e-301 1038.1 910 64.2
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 7.6e-297 1023.8 869 67.2
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 3.8e-296 1021.5 870 66.6
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 3.8e-296 1021.5 909 63.0
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 910 63.6
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 3.9e-293 1011.5 905 62.1
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.5e-292 1009.6 908 63.7
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.7e-291 1005.0 867 66.1
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.7e-288 996.1 906 61.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.9e-287 992.6 906 63.7
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.5e-287 992.3 898 62.1
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.5e-284 983.0 912 60.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 2.0e-284 982.6 907 61.4
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 3.7e-283 978.4 907 61.1
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-282 976.9 910 62.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 9.1e-282 973.8 904 62.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.5e-281 971.5 909 62.7
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.5e-279 964.5 919 59.0
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.2e-278 963.4 909 60.9
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 3.6e-278 961.8 907 60.1
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 7.9e-278 960.7 907 61.1
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 1.5e-276 956.4 905 61.9
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 2.2e-275 952.6 920 59.7
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.7e-275 951.8 905 61.5
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 2.4e-274 949.1 920 59.5
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 4.1e-274 948.3 924 61.5
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 7.0e-274 947.6 896 59.9
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.2e-273 946.8 899 61.1
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.5e-273 946.4 924 61.4
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 5.0e-272 941.4 908 60.5
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.9e-271 939.5 804 66.9
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.9e-271 939.5 910 59.3
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 7.2e-271 937.6 804 66.8
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.2e-270 936.8 921 60.2
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.7e-270 935.6 903 60.9
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.0e-270 934.1 896 60.8
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.0e-269 933.7 896 60.7
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-269 933.3 898 61.2
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 1.8e-269 932.9 889 60.6
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.8e-269 932.9 909 61.3
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.8e-269 932.9 909 61.6
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.3e-269 932.6 892 58.7
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 3.0e-269 932.2 919 59.3
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.9e-269 931.8 896 60.6
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.5e-268 929.9 909 60.9
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.5e-268 929.9 907 60.3
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 1.4e-266 923.3 905 58.9
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 7.0e-266 921.0 893 59.5
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 4.5e-265 918.3 807 65.7
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 3.8e-264 915.2 889 56.8
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.9e-263 912.9 908 60.9
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-262 910.2 916 56.4
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 6.7e-261 904.4 908 60.0
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 2.0e-260 902.9 914 58.3
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 9.7e-260 900.6 887 60.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 3.7e-259 898.7 905 58.5
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 5.3e-258 894.8 875 61.5
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 2.1e-254 882.9 906 57.8
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-253 880.2 866 59.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 5.2e-253 878.2 888 59.9
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 8.8e-253 877.5 888 59.9
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.9e-249 864.8 867 59.3
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.3e-248 862.8 847 58.3
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-246 857.1 866 58.3
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 3.6e-246 855.5 909 58.5
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 1.8e-245 853.2 913 57.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.4e-244 849.0 850 60.2
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.7e-243 846.7 870 58.5
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.2e-243 846.3 869 60.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.3e-239 832.0 906 57.3
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 3.4e-236 822.4 908 55.8
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.2e-235 819.7 911 53.6
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 8.3e-235 817.8 912 55.7
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 9.2e-234 814.3 912 51.8
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.0e-232 808.5 905 54.5
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 9.5e-231 804.3 868 55.3
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 4.9e-227 792.0 852 55.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 7.8e-225 784.6 852 56.3
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.1e-221 772.7 780 57.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 5.8e-220 768.5 861 54.9
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 6.0e-217 758.4 902 52.5
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 1.0e-216 757.7 735 60.1
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 6.2e-214 748.4 903 51.2
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.5e-212 743.8 903 50.3
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 5.8e-212 741.9 902 51.0
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.9e-210 736.9 905 51.2
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 2.7e-209 733.0 936 50.5
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 3.0e-208 729.6 912 49.9
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.1e-202 711.1 886 50.7
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 5.4e-202 708.8 851 51.4
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 5.1e-200 702.2 889 50.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.8e-198 696.4 918 51.1
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 2.8e-198 696.4 918 51.2
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 3.6e-198 696.0 856 53.2
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 5.8e-196 688.7 885 49.6
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 9.9e-196 688.0 881 51.3
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.6e-190 670.6 880 49.7
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.4e-189 666.8 796 53.1
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 2.1e-185 653.7 879 48.8
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 6.0e-185 652.1 879 49.4
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.0e-184 651.4 879 48.7
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.0e-184 651.4 917 46.7
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.8e-184 650.6 866 49.2
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 3.9e-184 649.4 891 48.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.1e-183 647.9 893 48.5
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.9e-183 647.1 866 48.8
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.7e-179 634.0 922 47.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.6e-177 627.5 767 53.6
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 2.1e-177 627.1 889 47.9
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.7e-177 626.7 778 50.8
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 4.5e-172 609.4 852 49.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 4.2e-170 602.8 925 45.8
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.2e-169 601.3 922 46.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.6e-169 600.9 772 51.3
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 8.8e-168 595.1 849 47.1
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.2e-158 562.0 749 51.1
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.7e-151 539.3 908 44.1
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 7.2e-138 495.7 901 43.0
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 3.6e-137 493.4 644 50.3
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 2.7e-132 477.2 459 61.0
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.0e-128 463.8 918 40.0
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.5e-122 444.9 758 44.2
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 7.0e-117 426.0 910 37.6
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.7e-115 421.4 406 61.8
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 4.3e-114 416.8 942 38.5
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 5.6e-114 416.4 943 38.4
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.6e-113 413.7 916 36.4
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 4.4e-111 406.8 936 37.7
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.5e-108 397.1 936 37.9
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.5e-106 391.7 936 38.0
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.6e-97 360.5 887 35.7
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 8.4e-86 322.8 1003 32.8
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 6.0e-84 316.6 962 33.0
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 8.1e-81 306.2 366 49.7
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 2.4e-77 294.7 312 51.0
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.8e-70 270.8 405 46.2
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 9.3e-69 266.2 378 47.1
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 9.3e-69 266.2 512 40.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.4e-64 252.3 358 44.7
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 8.4e-62 243.0 300 48.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 3.0e-59 234.6 258 54.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.1e-58 232.6 301 48.5
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 3.8e-54 217.6 359 41.2
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.1e-52 211.8 336 41.1
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-51 209.5 262 60.7
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.3e-50 204.1 803 28.0
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.6e-47 194.9 310 40.3
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.5e-45 187.2 176 54.5
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 1.0e-43 183.0 97 96.9
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-39 169.5 182 54.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.2e-21 107.1 155 43.2
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.7e-15 88.6 359 27.0
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 4.6e-07 61.2 70 48.6


User provided reference genes

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