Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 0.0e+00 1346.6 676 100.0
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 0.0e+00 1233.8 629 98.6
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.4e-202 709.5 606 64.4
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 2.1e-190 669.8 608 60.9
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 3.6e-174 615.9 622 59.5
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 5.8e-164 582.0 619 54.9
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 2.8e-158 563.1 613 54.5
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.2e-124 451.4 598 51.7
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.2e-115 420.6 532 49.8
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 4.0e-104 383.3 619 45.7
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 5.2e-96 356.3 531 48.2
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 1.2e-95 355.1 717 39.5
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 3.7e-94 350.1 633 40.9
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 9.2e-93 345.5 633 40.8
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 2.7e-92 344.0 619 40.9
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 5.0e-91 339.7 622 43.2
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 2.0e-87 327.8 613 40.5
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 5.4e-85 319.7 618 39.2
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 4.4e-79 300.1 726 35.4
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 2.1e-76 291.2 612 37.7
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 3.9e-75 287.0 596 37.9
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 6.6e-75 286.2 606 38.9
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 7.3e-74 282.7 610 36.9
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 1.1e-72 278.9 619 36.8
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 3.1e-72 277.3 610 36.7
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 1.5e-71 275.0 620 38.9
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 2.2e-70 271.2 610 36.2
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 5.4e-69 266.5 620 36.6
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 3.9e-67 260.4 599 37.7
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 3.9e-67 260.4 619 36.0
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 7.3e-66 256.1 617 36.8
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 9.6e-66 255.8 391 45.5
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 1.5e-63 248.4 621 35.6
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 4.4e-63 246.9 617 35.5
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 2.2e-62 244.6 380 45.3
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 8.4e-62 242.7 702 32.9
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.9e-61 241.5 201 65.2
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 3.5e-60 237.3 585 36.9
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 4.6e-60 236.9 614 34.7
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 1.3e-59 235.3 634 34.4
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.7e-59 235.0 606 33.0
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 3.0e-59 234.2 605 34.2
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.9e-59 233.8 606 33.7
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 3.9e-59 233.8 599 34.1
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 1.5e-58 231.9 678 31.1
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.6e-57 228.4 597 35.8
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 8.1e-57 226.1 661 33.9
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 8.1e-57 226.1 615 34.3
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 1.4e-56 225.3 601 35.3
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 6.9e-56 223.0 649 33.3
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 9.0e-56 222.6 595 35.0
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.7e-54 218.4 606 32.3
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.7e-54 218.4 615 33.8
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 9.3e-53 212.6 594 34.3
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 2.1e-52 211.5 603 33.5
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 8.7e-51 206.1 620 32.9
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 1.5e-50 205.3 617 33.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 2.5e-50 204.5 630 32.2
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.1e-45 189.1 508 34.3
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 1.4e-45 188.7 495 34.3
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.7e-43 179.9 619 32.5
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 1.1e-42 179.1 625 33.0
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 7.4e-42 176.4 703 29.0
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 9.6e-42 176.0 623 31.5
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 9.6e-42 176.0 701 29.2
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 2.6e-39 167.9 620 31.5
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.7e-38 165.2 688 28.8
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 1.7e-38 165.2 625 32.0
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 3.8e-38 164.1 639 30.2
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 4.9e-38 163.7 618 30.7
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 1.4e-37 162.2 667 28.2
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 2.1e-36 158.3 604 30.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 7.9e-36 156.4 594 30.8
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 4.3e-34 150.6 530 32.1
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 2.8e-33 147.9 616 27.9
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 8.2e-33 146.4 621 31.7
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 2.4e-32 144.8 520 31.3
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 5.9e-31 140.2 535 30.7
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 2.5e-29 134.8 548 30.8
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 3.2e-29 134.4 257 39.3
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 6.1e-28 130.2 583 30.0
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 7.9e-28 129.8 514 29.8
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.3e-27 129.0 602 28.4
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 1.3e-25 122.5 586 29.4
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 1.4e-24 119.0 565 26.9
Cpa.g.sc59.100 Carica papaya HOM05D005405 ORTHO05D006333 5.3e-24 117.1 351 33.0
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 5.3e-24 117.1 402 35.6
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 1.2e-23 115.9 662 27.0
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 5.0e-22 110.5 247 35.6
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 8.5e-22 109.8 603 26.2
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 3.6e-20 104.4 475 27.8
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 3.0e-19 101.3 381 32.3
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 1.5e-18 99.0 598 27.6
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 3.3e-18 97.8 278 31.3
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 4.4e-18 97.4 596 25.5
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 2.2e-17 95.1 577 26.7
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 2.2e-17 95.1 588 26.7
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 2.2e-17 95.1 82 59.8
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.8e-17 94.7 631 26.0
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 1.8e-16 92.0 623 27.0
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 2.4e-16 91.7 348 29.3
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 3.1e-16 91.3 417 26.1
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 3.1e-16 91.3 609 25.5
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 2.2e-14 85.1 609 25.9
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 2.9e-14 84.7 472 28.4
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 3.8e-14 84.3 415 28.9
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 5.0e-14 84.0 466 26.8
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 4.2e-13 80.9 668 24.9
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 1.2e-12 79.3 601 26.1
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 5.2e-11 73.9 356 30.1
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 2.0e-10 72.0 379 27.7
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 1.3e-09 69.3 348 26.7
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 2.2e-09 68.6 381 26.2
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 2.2e-09 68.6 667 26.7
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 2.8e-09 68.2 383 26.4
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 2.8e-09 68.2 371 27.8
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 2.8e-09 68.2 342 26.6
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 7.0e-08 63.5 628 23.7
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.2e-07 62.8 347 26.5
PSO832G2676 Papaver somniferum HOM05D059662 ORTHO05D303300 3.5e-07 61.2 447 24.8
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 3.8e-06 57.8 44 65.9


User provided reference genes

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