Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.7e-191 671.0 406 100.0
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-172 610.1 423 90.8
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.9e-110 402.9 405 68.1
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 9.1e-104 381.3 412 66.0
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.1e-100 370.2 451 59.2
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 7.9e-100 368.2 450 59.3
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 7.2e-93 345.1 433 51.7
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 9.7e-90 334.7 442 50.0
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.3e-89 334.3 401 55.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.5e-85 318.9 441 47.6
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.5e-82 310.8 424 48.6
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 9.7e-82 308.1 427 52.7
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 4.1e-80 302.8 427 54.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 9.1e-80 301.6 420 48.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.2e-79 301.2 422 49.1
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.7e-79 300.1 422 49.5
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.2e-77 292.7 405 51.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 7.2e-77 292.0 445 50.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.6e-76 289.7 423 45.6
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 6.1e-76 288.9 420 49.3
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.0e-76 288.5 419 45.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 8.0e-76 288.5 405 48.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.0e-75 288.1 414 49.3
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.8e-75 287.3 416 48.8
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.3e-75 287.0 406 51.0
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 7.5e-74 282.0 413 46.0
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 9.8e-74 281.6 212 71.2
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.8e-73 280.0 459 52.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 6.3e-73 278.9 409 47.2
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.1e-72 278.1 415 44.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.8e-72 277.3 409 49.6
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 9.1e-72 275.0 416 45.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.2e-71 274.6 423 47.0
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.6e-71 274.2 413 48.2
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.3e-70 271.2 419 46.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.7e-70 270.8 419 46.8
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 5.0e-70 269.2 408 46.8
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 8.6e-70 268.5 423 45.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 2.5e-69 266.9 426 53.3
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.2e-68 264.6 212 66.5
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.2e-68 264.6 410 45.4
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.1e-68 263.8 427 43.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.1e-68 262.3 447 42.1
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.0e-67 261.5 403 44.4
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.4e-67 261.2 436 43.8
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.0e-67 260.0 409 47.4
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.0e-67 260.0 405 45.2
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 3.0e-67 260.0 409 44.3
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.0e-67 259.6 586 40.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.2e-67 259.2 406 45.3
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 5.2e-67 259.2 407 45.5
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 7.5e-66 255.4 206 67.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 7.5e-66 255.4 402 42.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.3e-65 254.6 431 42.9
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.8e-65 253.4 409 50.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.8e-64 250.8 233 60.9
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.1e-64 250.0 363 47.4
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 7.0e-64 248.8 402 47.3
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.5e-63 246.5 422 45.5
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 7.8e-63 245.4 209 65.6
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.0e-62 245.0 442 43.0
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.9e-62 243.4 395 42.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 9.5e-61 238.4 171 74.3
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.6e-60 237.7 353 43.6
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.0e-59 235.0 422 41.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.0e-59 235.0 420 41.9
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.8e-59 234.2 350 48.3
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.2e-59 232.6 360 44.2
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.2e-58 231.5 213 62.4
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.5e-58 231.1 199 61.8
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-58 231.1 406 46.3
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 7.5e-58 228.8 425 41.4
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.3e-57 228.0 402 41.5
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.7e-57 227.6 212 62.3
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.1e-56 224.9 421 41.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.4e-56 224.6 420 45.2
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.4e-56 223.8 439 38.5
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.4e-56 222.6 422 38.2
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 9.2e-56 221.9 441 38.5
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.5e-55 219.9 417 39.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.5e-55 219.9 400 43.5
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 6.0e-55 219.2 423 38.3
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.3e-54 218.0 416 40.6
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 5.0e-54 216.1 415 39.8
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.9e-53 214.2 402 41.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.5e-53 213.8 406 48.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.5e-53 213.8 205 56.1
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 4.3e-53 213.0 495 42.2
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.8e-50 202.6 211 52.6
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.2e-48 196.8 427 36.3
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 4.1e-48 196.4 431 38.5
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.1e-48 196.4 412 37.4
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.6e-47 193.0 401 37.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.3e-43 180.6 176 57.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 4.0e-43 179.9 133 67.7
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.4e-42 176.8 210 51.9
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.8e-42 176.0 152 63.2
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-41 174.9 416 38.2
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.2e-39 168.3 407 43.5
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 2.1e-39 167.5 212 47.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.5e-39 166.8 204 46.1
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.3e-38 164.9 407 42.8
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 2.3e-38 164.1 407 42.5
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 5.1e-38 162.9 407 42.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.1e-36 157.5 339 37.5
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.4e-35 154.8 223 41.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.9e-32 144.4 202 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.6e-31 141.4 161 47.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.3e-30 138.3 208 46.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 9.6e-29 132.1 124 53.2
vmacro15912 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.3e-28 131.7 221 56.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.8e-28 130.6 366 41.3
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.5e-26 124.8 223 35.9
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 3.4e-26 123.6 338 45.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 9.9e-26 122.1 406 33.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.9e-25 120.6 109 56.9
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.4e-25 119.4 209 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 9.3e-24 115.5 127 46.5
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-23 114.8 378 32.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.7e-22 111.3 77 71.4
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.9e-21 107.8 68 76.5
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.5e-21 107.5 82 73.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 7.3e-21 105.9 89 58.4
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-17 95.1 146 46.6
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.2e-15 88.6 106 46.2
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.0e-14 85.5 116 45.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-13 80.5 174 36.2
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 9.6e-13 79.0 140 39.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 1.6e-12 78.2 288 34.7
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 2.8e-12 77.4 122 37.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 6.2e-12 76.3 171 36.3
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.4e-11 74.3 45 71.1
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-10 71.2 86 44.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 7.6e-10 69.3 84 44.0
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 1.0e-09 68.9 84 42.9
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-09 68.2 84 42.9
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 2.5e-08 64.3 174 33.3
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 7.1e-08 62.8 327 30.3
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 2.1e-07 61.2 308 33.8
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.3e-06 58.5 56 55.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-06 58.5 61 47.5
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 1.3e-06 58.5 56 53.6


User provided reference genes

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