Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 8.0e-115 417.2 218 100.0
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 8.0e-115 417.2 218 100.0
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 1.1e-76 290.4 222 72.1
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 4.7e-75 285.0 227 71.8
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 2.2e-72 276.2 219 69.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 2.9e-72 275.8 222 71.2
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 8.4e-72 274.2 223 71.3
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.2e-71 272.3 218 72.0
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.2e-71 271.9 213 74.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 7.1e-71 271.2 213 73.7
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.1e-71 271.2 213 73.7
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 7.1e-71 271.2 218 72.0
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 7.1e-71 271.2 222 71.2
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.2e-70 270.4 229 69.0
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.2e-70 270.4 220 70.0
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 2.7e-70 269.2 221 70.6
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 2.7e-70 269.2 218 71.6
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 4.6e-70 268.5 231 68.4
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 4.6e-70 268.5 219 70.3
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.8e-70 267.7 213 73.2
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 7.8e-70 267.7 217 71.0
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 2.3e-69 266.2 190 77.4
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.9e-69 265.4 224 70.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 5.1e-69 265.0 230 66.5
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 6.6e-69 264.6 205 72.7
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 1.1e-68 263.8 224 69.2
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.5e-68 263.5 224 69.6
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.5e-68 263.5 217 70.0
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 5.6e-68 261.5 219 68.9
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 7.3e-68 261.2 221 67.9
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.1e-67 259.6 218 69.3
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 2.1e-67 259.6 219 66.2
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 2.8e-67 259.2 219 66.7
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 3.6e-67 258.8 229 68.1
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 3.6e-67 258.8 226 67.7
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 6.2e-67 258.1 222 69.8
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 6.2e-67 258.1 226 66.8
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 1.1e-66 257.3 231 65.4
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 1.4e-66 256.9 216 68.1
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 9.0e-66 254.2 228 67.5
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.5e-65 253.4 224 68.8
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 2.6e-65 252.7 218 68.8
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 3.4e-65 252.3 218 67.0
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 7.6e-65 251.1 186 76.3
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 9.9e-65 250.8 218 67.4
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 9.9e-65 250.8 178 78.7
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 2.9e-64 249.2 217 66.4
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 3.8e-64 248.8 222 69.8
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 3.8e-64 248.8 222 69.8
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 3.8e-64 248.8 222 69.8
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 6.4e-64 248.1 187 75.4
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 6.4e-64 248.1 218 67.0
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.4e-63 246.9 220 67.3
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 1.9e-63 246.5 218 67.0
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 2.4e-63 246.1 218 68.3
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 4.2e-63 245.4 225 68.0
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 5.4e-63 245.0 225 68.0
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 5.4e-63 245.0 230 63.9
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 7.1e-63 244.6 221 67.0
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 7.1e-63 244.6 208 67.3
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 9.3e-63 244.2 211 65.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.6e-62 243.4 198 71.2
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 3.5e-62 242.3 182 77.5
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 3.5e-62 242.3 217 67.3
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 3.5e-62 242.3 156 84.0
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 6.0e-62 241.5 199 69.8
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 1.3e-61 240.4 176 77.3
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 1.8e-61 240.0 176 77.3
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.3e-61 239.6 227 63.0
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 6.7e-61 238.0 199 67.8
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.5e-60 236.9 162 79.0
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 2.5e-60 236.1 182 75.3
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 4.3e-60 235.3 214 66.4
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 7.4e-60 234.6 149 83.9
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 9.6e-60 234.2 216 67.6
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 6.2e-59 231.5 225 63.1
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 1.4e-58 230.3 195 70.3
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 2.4e-58 229.6 228 63.2
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.2e-57 227.3 151 82.1
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 2.0e-57 226.5 242 57.4
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 3.4e-57 225.7 173 72.3
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 1.3e-56 223.8 166 75.3
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 1.1e-55 220.7 223 62.8
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 1.9e-55 219.9 219 61.2
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 4.2e-55 218.8 225 61.3
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.1e-52 210.7 215 61.4
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 1.1e-52 210.7 201 60.7
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.0e-48 197.6 229 55.5
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 5.5e-47 191.8 220 57.7
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 1.6e-46 190.3 162 66.7
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.3e-43 180.6 155 68.4
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 2.1e-43 179.9 166 62.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 4.1e-42 175.6 166 60.8
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 7.6e-41 171.4 118 78.8
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 1.3e-35 154.1 108 72.2
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.3e-35 154.1 107 78.5
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.7e-27 125.9 82 84.1
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.4e-26 123.2 82 82.9
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.0e-25 120.2 143 53.8
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.0e-24 115.5 88 71.6
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 3.2e-23 112.8 74 79.7
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.2e-23 112.5 80 73.8
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 9.4e-23 111.3 179 39.1
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 1.0e-21 107.8 102 63.7
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 4.5e-17 92.4 58 84.5
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 3.2e-15 86.3 112 41.1
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 1.7e-11 73.9 48 81.2
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.8e-11 73.2 46 84.8
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 4.8e-11 72.4 107 44.9
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 9.1e-10 68.2 103 37.9
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.5e-07 58.9 37 81.1
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 5.5e-07 58.9 43 67.4
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 7.2e-07 58.5 89 40.4
Sc03g0008970 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.7e-06 55.8 58 56.9


User provided reference genes

Program Settings