Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 3.5e-183 644.8 327 100.0
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 7.2e-152 540.8 315 88.6
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 5.2e-102 375.2 306 66.3
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 1.2e-95 354.0 305 64.9
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 1.1e-72 277.7 306 52.0
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 8.2e-63 245.0 297 49.8
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 9.3e-59 231.5 166 71.1
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 2.5e-56 223.4 301 46.8
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 1.3e-55 221.1 301 46.5
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 6.3e-55 218.8 233 54.5
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 3.4e-53 213.0 175 65.1
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 7.7e-53 211.8 297 47.1
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 7.2e-51 205.3 302 45.0
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 1.6e-50 204.1 273 49.5
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 2.1e-50 203.8 294 45.6
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 2.7e-50 203.4 294 45.2
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 3.6e-50 203.0 272 49.6
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 3.6e-50 203.0 272 49.6
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 5.1e-49 199.1 314 42.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.3e-48 196.4 312 42.3
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 5.7e-48 195.7 255 46.7
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 9.7e-48 194.9 303 44.2
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 4.8e-47 192.6 242 47.9
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 9.1e-46 188.3 306 41.2
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 9.1e-46 188.3 243 46.9
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 2.6e-45 186.8 192 52.6
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 3.4e-45 186.4 228 48.2
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 2.9e-44 183.3 179 56.4
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 5.0e-44 182.6 219 48.4
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 1.4e-43 181.0 306 39.5
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 3.6e-42 176.4 169 56.2
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 4.7e-42 176.0 226 47.8
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 7.9e-42 175.3 341 38.4
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 1.8e-41 174.1 172 57.0
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 3.0e-41 173.3 226 47.8
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 3.9e-41 172.9 226 47.8
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 5.7e-40 169.1 225 45.3
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 9.7e-40 168.3 223 44.8
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 3.7e-39 166.4 327 37.6
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 8.2e-39 165.2 374 35.0
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 1.2e-37 161.4 172 50.6
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 3.8e-36 156.4 179 52.0
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 5.0e-36 156.0 204 44.6
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 5.0e-36 156.0 171 55.0
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 5.0e-36 156.0 211 45.5
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 1.9e-35 154.1 257 40.9
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 2.5e-35 153.7 300 37.0
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 4.2e-35 152.9 248 41.9
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 4.2e-35 152.9 243 38.3
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 4.2e-35 152.9 172 47.1
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 7.2e-35 152.1 241 42.7
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 9.4e-35 151.8 167 50.3
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 1.2e-34 151.4 320 37.2
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 1.2e-34 151.4 275 40.0
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 1.6e-34 151.0 171 52.0
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 2.1e-34 150.6 176 51.7
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 2.7e-34 150.2 297 38.0
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 6.1e-34 149.1 172 53.5
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 6.1e-34 149.1 271 41.3
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 8.0e-34 148.7 282 39.4
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 1.0e-33 148.3 281 38.1
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 3.0e-33 146.7 169 50.3
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 3.0e-33 146.7 296 35.8
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 1.5e-32 144.4 169 49.7
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 2.0e-32 144.1 120 60.0
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 4.4e-32 142.9 171 48.5
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 5.7e-32 142.5 173 52.0
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 7.4e-32 142.1 189 44.4
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 2.8e-31 140.2 185 43.2
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 6.3e-31 139.0 269 40.1
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 2.4e-30 137.1 320 33.4
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 4.1e-30 136.3 253 39.1
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 5.3e-30 136.0 240 42.5
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 5.0e-28 129.4 185 43.8
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 5.2e-25 119.4 320 33.8
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.5e-24 117.9 125 56.8
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 2.0e-24 117.5 140 51.4
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 1.7e-23 114.4 179 43.0
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 1.7e-23 114.4 169 47.9
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 6.3e-23 112.5 154 46.8
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 1.2e-21 108.2 143 49.0
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.6e-21 107.8 199 39.7
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 2.0e-21 107.5 172 41.9
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 7.7e-21 105.5 172 41.9
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.7e-20 104.4 131 48.1
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 7.2e-19 99.0 150 42.0
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 8.0e-18 95.5 186 37.6
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 2.3e-17 94.0 78 65.4
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 8.8e-17 92.0 236 36.0
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 5.7e-16 89.4 236 35.6
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 7.5e-16 89.0 234 35.5
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 4.9e-15 86.3 193 38.3
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 8.3e-15 85.5 265 29.4
Eucgr.F02862 Eucalyptus grandis HOM05D006714 ORTHO05D008103 3.1e-14 83.6 211 29.9
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 4.1e-14 83.2 175 32.0
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 9.1e-14 82.0 224 32.6
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 3.5e-13 80.1 143 41.3
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 5.6e-11 72.8 78 52.6
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 9.2e-06 55.5 102 39.2


User provided reference genes

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