Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036371 Camellia sinensis var. sinensis HOM05D006952 ORTHO05D008687 1.6e-63 245.7 110 100.0
MSTRG.5599 Avicennia marina HOM05D006952 ORTHO05D008687 1.0e-33 146.7 105 65.7
Oeu015014.1 Olea europaea HOM05D006952 ORTHO05D008687 1.0e-33 146.7 105 65.7
Oeu030529.1 Olea europaea HOM05D006952 ORTHO05D008687 1.0e-33 146.7 105 65.7
Sopen09g007000 Solanum pennellii HOM05D006952 ORTHO05D008687 2.3e-33 145.6 105 65.7
PGSC0003DMG400020322 Solanum tuberosum HOM05D006952 ORTHO05D008687 6.6e-33 144.1 105 64.8
CAN.G355.18 Capsicum annuum HOM05D006952 ORTHO05D008687 1.1e-32 143.3 105 64.8
Cc06_g01680 Coffea canephora HOM05D006952 ORTHO05D008687 1.1e-32 143.3 105 65.7
Nn2g11358 Nelumbo nucifera HOM05D006952 ORTHO05D008687 1.5e-32 142.9 105 63.8
MSTRG.19031 Avicennia marina HOM05D006952 ORTHO05D008687 1.9e-32 142.5 105 64.8
Solyc09g013140.3 Solanum lycopersicum HOM05D006952 ORTHO05D008687 2.5e-32 142.1 105 64.8
Migut.J00227 Erythranthe guttata HOM05D006952 ORTHO05D008687 3.3e-32 141.7 105 62.9
Hma1.2p1_0763F.1_g214620 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 5.6e-32 141.0 105 63.8
Manes.09G102000 Manihot esculenta HOM05D006952 ORTHO05D008687 5.6e-32 141.0 105 62.9
TAR636G2834 Trochodendron aralioides HOM05D006952 ORTHO05D008687 5.6e-32 141.0 105 61.0
DCAR_024036 Daucus carota HOM05D006952 ORTHO05D008687 1.2e-31 139.8 105 62.9
DCAR_024037 Daucus carota HOM05D006952 ORTHO05D008687 1.2e-31 139.8 105 62.9
Duzib128G2003 Durio zibethinus HOM05D006952 ORTHO05D008687 1.6e-31 139.4 105 61.9
MELO3C009193.2 Cucumis melo HOM05D006952 ORTHO05D008687 2.1e-31 139.0 105 61.9
CsaV3_3G034170 Cucumis sativus L. HOM05D006952 ORTHO05D008687 2.1e-31 139.0 105 61.0
SalBow5G3631 Salvia bowleyana HOM05D006952 ORTHO05D008687 2.1e-31 139.0 105 62.9
Cfa017257 Carpinus fangiana HOM05D006952 ORTHO05D008687 2.8e-31 138.7 105 61.9
Haze_20948 Corylus avellana HOM05D006952 ORTHO05D008687 2.8e-31 138.7 105 61.9
Thecc.05G022400 Theobroma cacao HOM05D006952 ORTHO05D008687 3.6e-31 138.3 105 61.0
Cpa.g.sc56.113 Carica papaya HOM05D006952 ORTHO05D008687 6.2e-31 137.5 107 59.8
Gohir.A09G163200 Gossypium hirsutum HOM05D006952 ORTHO05D008687 6.2e-31 137.5 105 61.0
arahy.Tifrunner.gnm1.ann1.EMW6YX Arachis hypogaea HOM05D006952 ORTHO05D008687 8.1e-31 137.1 105 61.0
arahy.Tifrunner.gnm1.ann1.ES8MJM Arachis hypogaea HOM05D006952 ORTHO05D008687 8.1e-31 137.1 105 61.0
Duzib093G2046 Durio zibethinus HOM05D006952 ORTHO05D008687 8.1e-31 137.1 105 61.0
VMungo1383G2957 Vigna mungo HOM05D006952 ORTHO05D008687 8.1e-31 137.1 105 61.0
TWI77G0025 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.4e-30 136.3 105 61.0
TAR369G0842 Trochodendron aralioides HOM05D006952 ORTHO05D008687 1.4e-30 136.3 105 61.9
Ciclev10013166m.g Citrus clementina HOM05D006952 ORTHO05D008687 1.8e-30 136.0 105 60.0
Glyma.07G144600 Glycine max HOM05D006952 ORTHO05D008687 1.8e-30 136.0 105 61.0
Glyma.18G196300 Glycine max HOM05D006952 ORTHO05D008687 1.8e-30 136.0 105 61.0
Lalb_Chr03g0042961 Lupinus albus HOM05D006952 ORTHO05D008687 2.3e-30 135.6 105 61.0
Phvul.008G108100 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 2.3e-30 135.6 105 60.0
Prupe.6G270600 Prunus persica HOM05D006952 ORTHO05D008687 2.3e-30 135.6 105 60.0
Sed0014444 Sechium edule HOM05D006952 ORTHO05D008687 2.3e-30 135.6 105 60.0
Aqoxy1G00719 Aquilegia oxysepala HOM05D006952 ORTHO05D008687 6.8e-30 134.0 105 60.0
Hma1.2p1_0244F.1_g101210 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 6.8e-30 134.0 103 59.2
PGR031G1789 Punica granatum HOM05D006952 ORTHO05D008687 8.9e-30 133.7 104 60.6
Duzib106G1795 Durio zibethinus HOM05D006952 ORTHO05D008687 1.2e-29 133.3 105 61.0
TPR.G1575 Trifolium pratense HOM05D006952 ORTHO05D008687 2.0e-29 132.5 105 59.0
Atru.chr8.2194 Acer truncatum HOM05D006952 ORTHO05D008687 2.6e-29 132.1 105 58.1
Eucgr.B02782 Eucalyptus grandis HOM05D006952 ORTHO05D008687 2.6e-29 132.1 103 60.2
Lalb_Chr19g0124771 Lupinus albus HOM05D006952 ORTHO05D008687 2.6e-29 132.1 105 59.0
Nn2g13603 Nelumbo nucifera HOM05D006952 ORTHO05D008687 2.6e-29 132.1 105 58.1
Glyma.03G077100 Glycine max HOM05D006952 ORTHO05D008687 3.4e-29 131.7 105 59.0
CANSAT35G1060 Cannabis sativa HOM05D006952 ORTHO05D008687 4.4e-29 131.3 105 57.1
MD04G1146800 Malus domestica HOM05D006952 ORTHO05D008687 4.4e-29 131.3 103 59.2
CiPaw.10G154300 Carya illinoinensis HOM05D006952 ORTHO05D008687 5.8e-29 131.0 105 57.1
Medtr7g066800 Medicago truncatula HOM05D006952 ORTHO05D008687 5.8e-29 131.0 105 58.1
Potri.004G103400 Populus trichocarpa HOM05D006952 ORTHO05D008687 5.8e-29 131.0 105 59.0
Potri.016G110900 Populus trichocarpa HOM05D006952 ORTHO05D008687 5.8e-29 131.0 105 59.0
Manes.08G087500 Manihot esculenta HOM05D006952 ORTHO05D008687 7.5e-29 130.6 105 58.1
Sed0025859 Sechium edule HOM05D006952 ORTHO05D008687 7.5e-29 130.6 104 57.7
Glyma.01G111500 Glycine max HOM05D006952 ORTHO05D008687 9.9e-29 130.2 105 59.0
Actinidia05346 Actinidia chinensis HOM05D006952 ORTHO05D008687 1.3e-28 129.8 98 62.2
Lsat_1_v5_gn_5_155300 Lactuca sativa HOM05D006952 ORTHO05D008687 1.7e-28 129.4 94 61.7
HanXRQChr13g0406321 Helianthus annuus HOM05D006952 ORTHO05D008687 3.7e-28 128.3 107 57.0
PSO339G3931 Papaver somniferum HOM05D006952 ORTHO05D008687 3.7e-28 128.3 105 56.2
TWI74G1053 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 4.9e-28 127.9 105 61.0
Phvul.010G008400 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 6.4e-28 127.5 105 57.1
ATR0618G178 Amborella trichopoda HOM05D006952 ORTHO05D008687 8.3e-28 127.1 104 57.7
Psat0s1978g0040 Pisum sativum HOM05D006952 ORTHO05D008687 1.4e-27 126.3 105 55.2
RcHm_v2.0_Chr3g0463891 Rosa chinensis HOM05D006952 ORTHO05D008687 1.4e-27 126.3 103 57.3
PSO384G3323 Papaver somniferum HOM05D006952 ORTHO05D008687 1.9e-27 125.9 105 55.2
Nitab4.5_0011723g0010 Nicotiana tabacum HOM05D006952 ORTHO05D008687 2.4e-27 125.6 79 74.7
Potri.006G096200 Populus trichocarpa HOM05D006952 ORTHO05D008687 2.4e-27 125.6 105 56.2
CiPaw.09G205900 Carya illinoinensis HOM05D006952 ORTHO05D008687 4.1e-27 124.8 105 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis HOM05D001533 ORTHO05D003743 5.4e-27 124.4 105 57.1
Lj3g0025387 Lotus japonicus HOM05D006952 ORTHO05D008687 5.4e-27 124.4 104 56.7
FAN09G1020 Fragaria x ananassa HOM05D006952 ORTHO05D008687 9.2e-27 123.6 103 56.3
SMO116G0119 Selaginella moellendorffii HOM05D006952 ORTHO05D008687 2.7e-26 122.1 104 56.7
Sp3g07540 Schrenkiella parvula HOM05D006952 ORTHO05D008687 4.6e-26 121.3 104 53.8
THA.LOC104816220 Tarenaya hassleriana HOM05D006952 ORTHO05D008687 4.6e-26 121.3 103 54.4
BcaC09g48008 Brassica carinata HOM05D006952 ORTHO05D008687 6.0e-26 120.9 104 53.8
AL3G20160 Arabidopsis lyrata HOM05D006952 ORTHO05D008687 7.8e-26 120.6 104 53.8
BolC1t05474H Brassica oleracea HOM05D006952 ORTHO05D008687 7.8e-26 120.6 104 53.8
BraA01t04315Z Brassica rapa HOM05D006952 ORTHO05D008687 7.8e-26 120.6 104 53.8
HanXRQChr13g0406361 Helianthus annuus HOM05D006952 ORTHO05D008687 7.8e-26 120.6 98 58.2
Lsat_1_v5_gn_5_155361 Lactuca sativa HOM05D006952 ORTHO05D008687 7.8e-26 120.6 101 56.4
BcaC09g48053 Brassica carinata HOM05D006952 ORTHO05D008687 1.0e-25 120.2 104 53.8
Ah.15g089870 Amaranthus hybridus HOM05D006952 ORTHO05D008687 1.3e-25 119.8 104 55.8
Carub.0003s0825 Capsella rubella HOM05D006952 ORTHO05D008687 1.7e-25 119.4 104 52.9
CARHR083460 Cardamine hirsuta HOM05D006952 ORTHO05D008687 1.7e-25 119.4 104 52.9
Thhalv10021991m.g Eutrema salsugineum HOM05D006952 ORTHO05D008687 2.3e-25 119.0 104 52.9
HanXRQChr13g0406351 Helianthus annuus HOM05D006952 ORTHO05D008687 3.0e-25 118.6 99 56.6
Medtr4g014970 Medicago truncatula HOM05D006952 ORTHO05D008687 3.0e-25 118.6 106 52.8
DCAR_008639 Daucus carota HOM05D006952 ORTHO05D008687 3.9e-25 118.2 104 54.8
Pp3c15_15480 Physcomitrium patens HOM05D006952 ORTHO05D008687 3.9e-25 118.2 104 54.8
AT3G09085 Arabidopsis thaliana HOM05D006952 ORTHO05D008687 5.1e-25 117.9 104 53.8
Pp3c9_14060 Physcomitrium patens HOM05D006952 ORTHO05D008687 8.6e-25 117.1 104 53.8
TPR.G5256 Trifolium pratense HOM05D006952 ORTHO05D008687 2.5e-24 115.5 104 51.9
TPR.G6676 Trifolium pratense HOM05D006952 ORTHO05D008687 4.3e-24 114.8 104 51.9
Cc07_g20110 Coffea canephora HOM05D006952 ORTHO05D008687 7.3e-24 114.0 104 57.7
Rhsim04G0165900 Rhododendron simsii HOM05D006952 ORTHO05D008687 1.6e-23 112.8 100 55.0
HanXRQChr13g0406341 Helianthus annuus HOM05D006952 ORTHO05D008687 2.4e-22 109.0 101 50.5
Os03g0265800 Oryza sativa ssp. japonica HOM05D006952 ORTHO05D008687 3.1e-22 108.6 103 50.5
Zm00001eb011810 Zea mays HOM05D006952 ORTHO05D008687 4.0e-22 108.2 103 50.5
Cc02_g31680 Coffea canephora HOM05D006952 ORTHO05D008687 2.0e-21 105.9 94 58.5
Gohir.D09G158700 Gossypium hirsutum HOM05D006952 ORTHO05D008687 1.1e-19 100.1 51 84.3
Gorai.006G180400 Gossypium raimondii HOM05D006952 ORTHO05D008687 1.1e-19 100.1 51 84.3
MBI14_g32939_MAGBIO Magnolia biondii HOM05D006952 ORTHO05D008687 1.4e-19 99.8 51 82.4
Mapoly0072s0073 Marchantia polymorpha HOM05D006952 ORTHO05D008687 3.2e-19 98.6 105 46.7
HPP92_012624 Vanilla planifolia HOM05D006952 ORTHO05D008687 3.2e-19 98.6 51 82.4
GSVIVG01034013001 Vitis vinifera HOM05D006952 ORTHO05D008687 2.3e-17 92.4 49 83.7
Sabra06G0073900 Salix brachista HOM05D006952 ORTHO05D008687 4.3e-16 88.2 82 57.3
Psat0s1978g0160 Pisum sativum HOM05D006607 ORTHO05D008166 3.6e-15 85.1 78 51.3
SEGI_04409 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 1.2e-13 80.1 86 52.3
TAR731G0001 Trochodendron aralioides HOM05D000320 ORTHO05D000532 5.1e-09 64.7 56 58.9
RcHm_v2.0_Chr4g0412041 Rosa chinensis HOM05D006952 ORTHO05D008687 3.3e-08 62.0 49 59.2
Cre03.g188900 Chlamydomonas reinhardtii HOM05D006952 ORTHO05D008687 4.8e-07 58.2 89 38.2


User provided reference genes

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