Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.9e-116 422.5 223 100.0
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.1e-98 363.6 240 79.6
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.3e-96 356.7 240 77.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.3e-96 356.7 240 77.9
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 6.5e-96 354.4 248 76.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.2e-95 351.7 240 77.9
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.8e-93 346.3 237 77.2
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.3e-93 345.9 240 76.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.5e-92 343.2 239 74.9
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.8e-91 339.0 233 78.5
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.8e-91 338.2 231 76.2
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.4e-90 335.9 240 75.0
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 7.0e-90 334.3 238 74.4
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 7.0e-90 334.3 240 73.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 9.1e-90 334.0 237 75.5
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.7e-89 332.4 240 73.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.7e-89 332.4 236 74.2
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.9e-89 331.3 238 73.9
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.3e-88 330.1 228 76.3
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.3e-88 330.1 228 76.3
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 6.5e-88 327.8 230 74.8
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 6.5e-88 327.8 242 72.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.1e-87 327.0 242 71.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.5e-87 326.6 234 74.8
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.5e-87 325.9 242 72.3
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 3.2e-87 325.5 245 71.4
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.2e-87 324.3 234 72.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.6e-86 323.2 261 67.0
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.7e-86 322.4 228 75.4
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.7e-86 322.4 240 70.8
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.6e-86 322.0 237 71.7
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 4.7e-86 321.6 238 70.6
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.7e-86 321.6 231 73.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 4.7e-86 321.6 238 71.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 6.1e-86 321.2 220 76.4
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-86 320.9 233 72.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.0e-86 320.9 238 69.3
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.0e-86 320.9 238 69.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.0e-85 320.5 243 70.0
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-85 319.7 233 71.7
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 3.0e-85 318.9 237 70.0
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 3.0e-85 318.9 233 71.7
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.0e-85 318.9 233 71.2
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.0e-85 318.9 233 71.7
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.2e-85 318.2 232 72.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 5.2e-85 318.2 233 70.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 6.8e-85 317.8 232 72.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-85 317.8 233 71.2
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-85 317.8 233 71.2
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-85 317.8 233 71.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 8.8e-85 317.4 233 71.7
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 8.8e-85 317.4 250 68.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 8.8e-85 317.4 234 70.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.2e-84 317.0 235 71.1
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.2e-84 317.0 233 71.7
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.2e-84 317.0 235 71.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.2e-84 317.0 235 70.6
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.6e-84 315.8 239 69.0
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 3.4e-84 315.5 240 70.4
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 3.4e-84 315.5 240 70.4
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.4e-84 315.5 240 70.4
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 3.4e-84 315.5 228 73.7
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.4e-84 315.5 228 73.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.4e-84 315.1 242 70.2
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 4.4e-84 315.1 234 71.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.7e-84 314.7 243 69.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 5.7e-84 314.7 228 71.9
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 7.5e-84 314.3 233 71.2
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 7.5e-84 314.3 228 73.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 7.5e-84 314.3 233 69.5
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 9.8e-84 313.9 234 70.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.3e-83 313.5 233 70.8
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.3e-83 313.5 234 70.9
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.3e-83 313.5 234 70.9
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.3e-83 313.5 234 70.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.3e-83 313.5 234 70.9
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.3e-83 313.5 238 69.3
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-83 313.5 239 69.5
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.3e-83 313.5 242 69.0
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.7e-83 313.2 242 69.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 2.2e-83 312.8 228 71.5
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.8e-83 312.4 230 73.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.8e-83 312.4 233 69.5
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.1e-82 310.5 239 69.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-82 310.5 233 70.0
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.4e-82 310.1 236 69.5
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 3.1e-82 308.9 240 68.3
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 3.1e-82 308.9 240 68.3
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 3.1e-82 308.9 240 68.3
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.1e-82 308.9 226 72.6
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.1e-82 308.5 238 68.5
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 5.4e-82 308.1 228 71.5
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.4e-82 308.1 228 71.5
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.2e-81 307.0 233 69.5
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.0e-81 306.2 238 67.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 3.5e-81 305.4 240 69.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.0e-80 303.9 228 71.1
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.8e-80 302.0 258 64.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.0e-80 301.6 213 75.1
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.9e-79 299.7 213 75.1
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.5e-79 299.3 228 69.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.2e-79 298.5 264 62.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.0e-77 293.9 235 66.8
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.0e-77 292.0 227 70.5
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.8e-77 291.2 235 66.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 8.8e-77 290.8 228 66.7
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.2e-76 290.4 214 72.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.7e-76 288.1 228 66.7
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 7.0e-74 281.2 213 72.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 9.2e-74 280.8 233 67.0
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.6e-73 280.0 227 63.9
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.3e-72 276.2 227 63.9
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-71 273.9 223 64.1
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.5e-71 273.5 210 71.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 5.6e-71 271.6 228 63.2
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.2e-70 270.4 232 64.7
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-70 267.7 214 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.4e-69 266.9 227 61.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.8e-69 266.5 214 67.8
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.6e-68 262.7 235 59.1
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 9.8e-68 260.8 233 60.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.2e-65 253.8 185 74.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.0e-65 253.1 184 71.2
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 2.7e-65 252.7 179 74.9
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.9e-63 246.5 232 58.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.9e-63 246.5 232 58.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-61 239.6 183 71.6
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 9.8e-60 234.2 181 70.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.7e-59 232.3 193 67.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 4.9e-59 231.9 173 72.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.6e-54 216.9 198 61.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.6e-49 200.3 167 66.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 2.7e-49 199.5 134 76.1
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 7.8e-49 198.0 177 62.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.0e-48 196.1 162 64.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.1e-48 195.3 153 66.7
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 5.1e-40 168.7 105 79.0
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.6e-38 162.5 109 74.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.9e-37 158.3 131 69.5
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.9e-36 154.5 129 64.3
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-35 153.7 125 65.6
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.1e-34 151.0 106 69.8
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.6e-31 138.7 116 62.1
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-26 124.0 98 63.3
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 7.1e-26 121.7 107 64.5
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.3e-24 116.7 118 61.0
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.8e-19 99.4 85 56.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.7e-16 88.6 89 56.2
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.3e-15 86.3 55 70.9
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.8e-12 75.5 79 60.8
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.6e-06 57.4 185 25.9


User provided reference genes

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