Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.9e-20 100.1 59 100.0
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.7e-19 98.6 59 98.3
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.1e-18 95.9 59 96.6
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.2e-14 79.7 59 83.1
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.4e-13 79.0 64 73.4
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.0e-12 75.1 62 74.2
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.4e-12 74.3 60 73.3
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.7e-11 72.0 59 66.1
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 5.0e-11 70.5 60 68.3
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 6.5e-11 70.1 62 71.0
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.5e-11 69.7 60 66.7
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 9.4e-10 66.2 62 66.1
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 9.4e-10 66.2 62 66.1
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 9.4e-10 66.2 62 66.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.2e-09 65.9 62 62.9
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.2e-09 65.9 61 63.9
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 2.1e-09 65.1 62 62.9
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.1e-09 65.1 62 69.4
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.7e-09 64.7 62 61.3
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 2.7e-09 64.7 62 64.5
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.7e-09 64.7 61 63.9
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 62.9
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 6.1e-09 63.5 67 61.2
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 7.9e-09 63.2 62 61.3
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 7.9e-09 63.2 62 61.3
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 7.9e-09 63.2 62 61.3
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 7.9e-09 63.2 62 61.3
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.0e-08 62.8 60 65.0
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.8e-08 62.0 67 59.7
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.8e-08 62.0 61 62.3
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-08 61.6 62 59.7
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-08 61.6 62 59.7
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 2.3e-08 61.6 62 59.7
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 3.0e-08 61.2 63 61.9
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 3.9e-08 60.8 61 60.7
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.9e-08 60.8 62 61.3
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 5.1e-08 60.5 62 61.3
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 5.1e-08 60.5 63 61.9
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.1e-08 60.5 61 62.3
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 6.7e-08 60.1 57 61.4
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 8.8e-08 59.7 63 58.7
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 8.8e-08 59.7 63 61.9
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 8.8e-08 59.7 64 57.8
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 1.1e-07 59.3 64 59.4
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.1e-07 59.3 63 60.3
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.5e-07 58.9 62 59.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 1.5e-07 58.9 61 60.7
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 2.0e-07 58.5 62 62.9
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.6e-07 58.2 64 57.8
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 3.3e-07 57.8 62 58.1
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 3.3e-07 57.8 62 56.5
Hma1.2p1_0312F.1_g121430 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 3.3e-07 57.8 61 60.7
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 4.4e-07 57.4 65 63.1
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 4.4e-07 57.4 62 61.3
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 4.4e-07 57.4 65 56.9
Rhsim03G0011800 Rhododendron simsii HOM05D005524 ORTHO05D005392 4.4e-07 57.4 60 65.0
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 4.4e-07 57.4 62 58.1
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 4.4e-07 57.4 64 60.9
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 5.7e-07 57.0 62 56.5
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 5.7e-07 57.0 62 58.1
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 5.7e-07 57.0 60 60.0
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 7.4e-07 56.6 62 54.8
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-06 55.8 62 56.5
Zm00001eb252840 Zea mays HOM05D054024 ORTHO05D005392 1.7e-06 55.5 59 54.2
Lalb_Chr12g0205751 Lupinus albus HOM05D005524 ORTHO05D005392 2.2e-06 55.1 63 58.7
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 2.8e-06 54.7 66 56.1
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 4.8e-06 53.9 62 54.8
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 4.8e-06 53.9 60 55.0
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 4.8e-06 53.9 57 63.2
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 6.3e-06 53.5 62 54.8
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 6.3e-06 53.5 62 54.8
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 6.3e-06 53.5 62 54.8
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 6.3e-06 53.5 64 54.7
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 8.2e-06 53.1 63 55.6


User provided reference genes

Program Settings