Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 2.0e-30 136.0 124 100.0
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 1.3e-29 133.3 124 98.4
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 3.8e-13 78.6 60 66.7
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 8.5e-13 77.4 60 66.7
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 1.9e-12 76.3 59 64.4
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.2e-11 73.6 60 63.3
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.2e-11 73.6 60 66.7
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.7e-11 72.4 58 67.2
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 4.7e-11 71.6 61 60.7
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 4.7e-11 71.6 61 67.2
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 1.0e-10 70.5 58 56.9
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 1.4e-10 70.1 57 63.2
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 1.8e-10 69.7 69 56.5
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 2.3e-10 69.3 65 56.9
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 2.3e-10 69.3 60 65.0
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 2.3e-10 69.3 61 65.6
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 4.0e-10 68.6 60 58.3
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 5.2e-10 68.2 73 52.1
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 5.2e-10 68.2 73 50.7
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 8.8e-10 67.4 53 66.0
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 8.8e-10 67.4 53 66.0
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 8.8e-10 67.4 53 66.0
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 1.2e-09 67.0 56 57.1
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 1.2e-09 67.0 58 53.4
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 1.5e-09 66.6 59 61.0
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.0e-09 66.2 60 58.3
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 2.0e-09 66.2 55 65.5
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.6e-09 65.9 58 58.6
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 2.6e-09 65.9 60 61.7
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 2.6e-09 65.9 60 58.3
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.6e-09 65.9 60 58.3
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 3.4e-09 65.5 60 58.3
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 3.4e-09 65.5 55 65.5
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 4.4e-09 65.1 61 65.6
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 5.7e-09 64.7 60 65.0
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 7.5e-09 64.3 73 50.7
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 7.5e-09 64.3 66 54.5
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 9.8e-09 63.9 73 50.7
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 1.3e-08 63.5 60 55.0
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.3e-08 63.5 60 55.0
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 1.7e-08 63.2 60 63.3
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 1.7e-08 63.2 59 61.0
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 3.7e-08 62.0 58 56.9
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 4.9e-08 61.6 61 55.7
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 4.9e-08 61.6 61 63.9
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 6.3e-08 61.2 68 51.5
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 1.4e-07 60.1 58 55.2
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 1.4e-07 60.1 81 43.2
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 1.4e-07 60.1 57 61.4
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 1.4e-07 60.1 55 58.2
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 1.4e-07 60.1 66 56.1
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 1.8e-07 59.7 58 55.2
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.4e-07 59.3 64 51.6
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.1e-07 58.9 71 45.1
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 3.1e-07 58.9 70 52.9
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 4.1e-07 58.5 46 56.5
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.1e-07 58.5 71 45.1
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 5.4e-07 58.2 60 56.7
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 7.0e-07 57.8 60 51.7
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 7.0e-07 57.8 60 53.3
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 7.0e-07 57.8 71 43.7
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 7.0e-07 57.8 60 55.0
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.2e-06 57.0 60 56.7
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 1.2e-06 57.0 64 51.6
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 1.2e-06 57.0 60 53.3
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 1.6e-06 56.6 59 50.8
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 1.6e-06 56.6 60 51.7
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 1.6e-06 56.6 60 48.3
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 2.0e-06 56.2 68 48.5
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 2.7e-06 55.8 70 50.0
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 2.7e-06 55.8 59 49.2
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 2.7e-06 55.8 61 59.0
PSO063G2436 Papaver somniferum HOM05D007427 ORTHO05D006413 2.7e-06 55.8 64 50.0
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 3.5e-06 55.5 57 57.9
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 5.9e-06 54.7 52 53.8


User provided reference genes

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