Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 2105.9 1077 100.0
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1570.8 1091 75.8
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1505.3 1094 71.9
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1301.6 1107 63.1
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1273.8 1118 62.5
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1240.3 1118 60.2
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1238.4 1101 59.9
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 0.0e+00 1233.0 938 71.0
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1230.7 1112 60.2
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1217.2 1070 60.7
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1177.5 1110 57.5
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1173.3 1114 57.5
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1172.9 1105 57.4
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1162.5 1109 56.9
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1161.4 1109 56.9
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1156.0 1110 57.4
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1155.6 1109 57.3
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1152.1 1113 56.7
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1150.2 1084 58.3
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1147.5 1113 56.2
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1144.4 1104 57.4
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1140.2 1104 57.2
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1134.4 1103 56.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 0.0e+00 1132.1 1101 56.1
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 0.0e+00 1129.4 1102 54.8
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 0.0e+00 1125.2 1098 55.5
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1124.8 1108 56.0
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1119.4 1103 55.9
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 0.0e+00 1118.6 1096 55.7
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 0.0e+00 1115.9 1102 54.0
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1112.4 1105 55.1
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1112.1 1109 55.5
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1089.7 1107 54.4
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 0.0e+00 1075.5 1120 53.0
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1075.5 1114 54.0
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 1.1e-310 1070.1 1106 53.1
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 1.2e-309 1066.6 1095 53.7
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 1.6e-309 1066.2 1113 53.0
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 8.9e-308 1060.4 1116 53.4
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.5e-307 1059.7 1102 52.9
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 3.4e-307 1058.5 1115 53.6
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-305 1053.5 959 60.6
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 1.4e-305 1053.1 1119 51.2
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 4.1e-305 1051.6 1103 54.0
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 2.1e-304 1049.3 1052 54.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 1.6e-301 1039.6 1106 52.0
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 1.4e-297 1026.5 1103 52.4
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 7.1e-297 1024.2 1099 51.7
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 5.6e-294 1014.6 1107 51.1
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 5.6e-294 1014.6 1061 53.0
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 7.3e-294 1014.2 1101 51.4
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 2.2e-290 1002.7 1091 51.2
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 6.4e-290 1001.1 1098 51.9
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 6.4e-290 1001.1 1045 53.4
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 8.4e-290 1000.7 1115 51.1
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.4e-289 1000.0 1101 50.8
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 2.4e-289 999.2 1116 50.9
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 4.2e-289 998.4 1101 51.0
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.6e-288 996.5 926 58.1
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 2.1e-288 996.1 1107 51.0
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 1.9e-286 989.6 1123 49.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.6e-286 987.3 1108 50.3
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 1.3e-285 986.9 1121 49.8
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 2.1e-285 986.1 1021 54.3
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 6.2e-285 984.6 1107 50.3
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 5.6e-278 961.4 1094 50.3
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.1e-277 959.5 969 55.4
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 1.8e-268 929.9 1101 48.5
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 5.3e-268 928.3 1135 48.3
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.2e-264 917.1 1155 46.0
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 2.7e-264 916.0 1106 47.7
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-261 906.7 884 55.2
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.1e-260 904.0 799 62.2
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 2.5e-257 892.9 829 58.1
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.3e-254 882.5 912 56.0
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 4.3e-254 882.1 972 50.2
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 4.8e-253 878.6 1122 46.5
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 6.9e-252 874.8 1084 46.7
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 9.4e-249 864.4 762 60.4
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.7e-245 853.6 1125 44.5
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 3.8e-242 842.4 918 51.0
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 2.7e-224 783.1 962 46.8
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 3.9e-194 682.9 745 51.9
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.5e-193 681.0 1084 40.1
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.2e-189 667.2 761 47.7
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.6e-184 651.0 632 55.2
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 5.8e-174 615.9 730 47.8
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.4e-164 584.7 487 65.7
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.3e-159 566.2 1221 36.3
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 4.6e-155 553.1 1140 33.3
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.0e-142 511.1 1325 30.0
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.2e-140 502.7 580 51.9
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.6e-136 491.5 345 73.0
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.5e-126 458.4 684 42.3
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 7.0e-119 433.0 449 53.2
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.6e-113 414.5 346 65.3
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 3.8e-109 400.6 299 70.6
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.7e-97 360.1 394 50.3
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 8.3e-96 356.3 337 59.3
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 4.9e-88 330.5 353 53.3
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.6e-86 323.9 294 57.5
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 6.6e-85 320.1 292 57.2
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.4e-81 307.8 284 58.5
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.0e-74 284.3 357 46.2
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 4.7e-59 234.2 170 66.5
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.4e-57 228.0 397 40.8
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 8.4e-56 223.4 230 57.4
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 2.1e-54 218.8 172 61.6
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.7e-53 215.7 144 72.9
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.1e-52 213.0 259 51.0
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.6e-51 209.1 482 34.9
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.3e-45 189.5 252 44.8
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 7.4e-44 183.7 139 64.0
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 8.1e-43 180.3 200 50.0
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 5.5e-39 167.5 138 63.8
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 5.5e-39 167.5 313 36.4
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.9e-31 142.5 375 28.5
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 2.5e-23 115.5 99 55.6
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.5e-23 115.5 99 55.6
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.5e-23 115.5 99 55.6
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 4.2e-23 114.8 134 53.0
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.8e-21 109.4 137 45.3
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.5e-20 106.3 97 64.9
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.8e-19 102.1 71 69.0
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 6.9e-18 97.4 161 38.5
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-13 81.6 232 28.4
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.8e-11 75.5 136 36.0
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 3.1e-10 72.0 357 23.2
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 5.3e-10 71.2 118 40.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 1.7e-08 66.2 64 48.4
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.0e-08 64.7 115 34.8
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.5e-08 64.3 48 56.2


User provided reference genes

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