Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.9e-34 147.9 71 100.0
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.9e-34 147.9 71 100.0
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.0e-30 135.2 71 90.1
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.3e-29 132.5 72 88.9
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.7e-29 131.0 71 85.9
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 85.9
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 87.3
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 6.4e-29 130.2 71 88.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.4e-29 130.2 70 87.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 86.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 86.1
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 85.9
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 85.9
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.2e-28 127.9 70 82.9
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 4.1e-28 127.5 72 86.1
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 9.2e-28 126.3 71 84.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 9.2e-28 126.3 68 83.8
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.6e-27 125.6 71 83.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 81.4
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.5e-27 124.4 71 81.7
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 4.6e-27 124.0 65 87.7
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 4.6e-27 124.0 71 83.1
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.8e-27 123.2 69 84.1
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.8e-27 123.2 69 84.1
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.8e-27 123.2 69 84.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 7.8e-27 123.2 71 80.3
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 80.3
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 80.3
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 81.7
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.7e-26 122.1 71 78.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.7e-26 122.1 71 81.7
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.7e-26 122.1 69 82.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.7e-26 122.1 69 82.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.7e-26 122.1 72 79.2
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 65 84.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.3e-26 121.7 72 80.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.3e-26 121.7 72 80.6
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 80.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 80.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 80.6
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 83.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 80.3
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 80.6
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 80.6
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.9e-26 120.9 72 80.6
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.0e-26 120.6 71 80.3
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 5.0e-26 120.6 65 84.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.0e-26 120.6 66 80.3
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 6.6e-26 120.2 66 84.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 6.6e-26 120.2 73 76.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 6.6e-26 120.2 73 76.7
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 8.6e-26 119.8 71 78.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 8.6e-26 119.8 71 78.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.6e-26 119.8 69 82.6
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.6e-26 119.8 71 81.7
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 8.6e-26 119.8 71 81.7
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 8.6e-26 119.8 73 78.1
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.6e-26 119.8 71 81.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.1e-25 119.4 71 78.9
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-25 119.4 72 79.2
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.1e-25 119.4 72 79.2
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.1e-25 119.4 65 84.6
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.1e-25 119.4 72 79.2
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 77.8
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.9e-25 118.6 70 75.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.9e-25 118.6 65 83.1
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 81.7
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.9e-25 118.6 72 77.8
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.9e-25 118.6 65 80.0
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.5e-25 118.2 71 80.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.5e-25 118.2 65 84.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 78.9
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 3.3e-25 117.9 66 80.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.3e-25 117.9 71 77.5
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.3e-25 117.9 72 77.8
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 5.6e-25 117.1 72 76.4
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 5.6e-25 117.1 66 81.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 5.6e-25 117.1 72 77.8
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.3e-25 116.7 74 78.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 7.3e-25 116.7 71 78.9
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 9.5e-25 116.3 71 78.9
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 9.5e-25 116.3 72 79.2
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.2e-24 115.9 72 77.8
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.8e-24 114.8 65 81.5
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 74.6
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 76.1
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.2e-24 113.6 72 76.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 6.2e-24 113.6 72 76.4
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 6.2e-24 113.6 71 76.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.2e-24 113.6 66 80.3
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-23 112.8 71 76.1
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-23 112.5 69 75.4
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.8e-23 112.1 62 82.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 76.1
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.8e-23 112.1 65 78.5
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 6.8e-23 110.2 72 72.2
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 8.9e-23 109.8 71 74.6
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 72 72.2
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.5e-22 109.0 65 76.9
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 77.0
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.6e-22 108.2 65 75.4
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.6e-22 108.2 65 75.4
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.6e-22 108.2 65 75.4
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.6e-22 108.2 65 75.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.6e-22 108.2 73 69.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.6e-22 108.2 99 56.6
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 4.4e-22 107.5 95 60.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 71 71.8
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 68 70.6
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 71 71.8
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 5.8e-22 107.1 71 71.8
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.5e-22 106.7 65 73.8
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 9.8e-22 106.3 90 61.1
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.3e-21 105.9 70 68.6
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 91 62.6
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.3e-21 105.9 119 52.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 2.2e-21 105.1 72 72.2
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 61 75.4
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.7e-21 104.4 55 87.3
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.9e-21 104.0 66 72.7
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 6.4e-21 103.6 63 76.2
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 6.4e-21 103.6 62 74.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 8.3e-21 103.2 93 59.1
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 8.3e-21 103.2 60 76.7
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 8.3e-21 103.2 55 85.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 8.3e-21 103.2 95 58.9
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 8.3e-21 103.2 65 72.3
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 61 73.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 61 73.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-20 102.8 61 73.8
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.1e-20 102.8 61 72.1
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-20 102.4 61 73.8
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-20 102.4 61 73.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.4e-20 102.4 61 72.1
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-20 102.4 61 73.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.2e-20 101.3 68 67.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.2e-20 101.3 61 73.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 2.7e-19 98.2 66 75.8
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.7e-19 98.2 65 67.7
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-19 97.8 81 61.7
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 7.8e-19 96.7 55 81.8
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.0e-18 94.7 67 61.2
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 3.0e-18 94.7 55 76.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.9e-18 94.4 64 67.2
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.9e-18 94.4 64 67.2
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.6e-18 93.6 56 80.4
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 8.6e-18 93.2 57 78.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 8.6e-18 93.2 50 88.0
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-17 92.0 71 64.8
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.5e-17 91.7 57 75.4
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.3e-17 91.3 56 76.8
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.3e-17 90.1 56 75.0
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 9.5e-17 89.7 56 75.0
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.7e-16 87.4 55 74.5
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.7e-16 87.4 56 75.0
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.2e-16 87.0 65 64.6
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.1e-15 86.3 53 69.8
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.3e-15 85.1 56 73.2
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 6.8e-15 83.6 55 65.5
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.2e-14 82.8 62 56.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.0e-14 82.0 65 52.3
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.6e-14 81.6 51 74.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 7.5e-14 80.1 57 63.2
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.9e-13 78.2 56 62.5
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-13 77.4 39 84.6
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.4e-12 75.9 49 65.3
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.9e-12 75.5 50 66.0
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 3.2e-12 74.7 50 64.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 7.1e-12 73.6 38 84.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 7.1e-12 73.6 58 58.6
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.7e-11 71.6 40 75.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-11 70.5 51 66.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-11 70.5 51 66.7
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.5e-09 65.1 32 84.4
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 6.2e-08 60.5 41 75.6
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.1e-07 59.7 42 71.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 6.8e-07 57.0 49 55.1
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 9.9e-06 53.1 54 44.4


User provided reference genes

Program Settings