Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.3e-106 389.8 200 100.0
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 9.7e-83 310.5 184 90.2
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.1e-73 280.4 187 77.0
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 7.4e-67 257.7 206 67.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 2.2e-66 256.1 186 73.7
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 8.2e-66 254.2 184 77.2
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.5e-62 242.7 206 63.6
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 6.1e-61 238.0 184 66.8
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.2e-59 233.8 207 61.4
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 4.4e-59 231.9 184 66.8
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 6.3e-58 228.0 207 58.0
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 8.2e-58 227.6 204 59.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.8e-57 226.5 184 63.6
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 2.4e-57 226.1 207 61.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 4.1e-57 225.3 206 57.8
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 9.1e-57 224.2 194 60.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.6e-56 223.4 207 57.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.6e-56 223.4 207 57.0
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.7e-56 222.6 184 64.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 2.7e-56 222.6 200 59.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 5.9e-56 221.5 185 63.8
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.0e-55 220.7 184 63.6
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.0e-55 220.7 207 59.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-55 220.3 189 61.9
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.2e-55 219.5 167 69.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.5e-54 216.9 206 55.8
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.9e-54 216.5 185 60.0
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.5e-54 216.1 187 61.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.5e-54 216.1 208 57.2
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 3.2e-54 215.7 184 60.9
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.2e-54 215.3 185 59.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.5e-54 214.9 207 56.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.2e-54 214.5 207 56.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.2e-53 213.8 207 56.5
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.2e-53 213.8 206 54.4
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.2e-53 213.8 184 60.9
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.7e-53 212.6 185 63.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 2.7e-53 212.6 182 61.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 4.7e-53 211.8 184 59.8
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.7e-53 211.8 195 56.9
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 4.7e-53 211.8 215 54.4
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 4.7e-53 211.8 192 60.9
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.0e-52 210.7 186 59.7
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 2.3e-52 209.5 185 60.5
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 6.8e-52 208.0 194 57.7
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 6.8e-52 208.0 184 59.2
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.2e-51 207.2 207 56.0
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.6e-51 206.1 199 58.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 7.5e-51 204.5 190 54.7
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.7e-50 202.2 187 57.2
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 3.7e-50 202.2 184 58.2
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 8.3e-50 201.1 190 54.2
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.1e-49 200.7 185 57.8
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.8e-49 199.9 184 57.1
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.8e-49 199.9 184 60.3
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.4e-49 199.5 223 49.3
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 4.1e-49 198.7 184 57.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 9.1e-49 197.6 212 52.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.7e-48 196.1 206 53.9
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 4.5e-48 195.3 185 56.8
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 5.9e-48 194.9 184 57.6
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 7.7e-48 194.5 203 55.2
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.0e-47 194.1 233 48.9
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.3e-47 193.0 184 54.9
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.5e-47 191.4 184 54.3
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.5e-47 191.4 189 53.4
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 8.6e-47 191.0 194 56.2
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.1e-46 190.7 184 57.1
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.1e-46 190.7 184 55.4
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 3.3e-46 189.1 200 54.5
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.2e-46 188.7 200 54.0
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.6e-45 186.8 184 53.3
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.1e-45 186.4 184 52.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.1e-45 186.4 184 53.3
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.1e-45 186.4 184 53.8
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 3.6e-45 185.7 184 53.3
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 8.0e-45 184.5 163 62.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.4e-44 183.7 186 54.8
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.4e-44 183.7 185 50.8
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.0e-44 182.6 184 51.1
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 3.0e-44 182.6 171 57.9
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 6.8e-44 181.4 184 52.2
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 6.8e-44 181.4 166 56.0
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 3.4e-43 179.1 206 47.6
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.3e-42 177.2 163 59.5
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.7e-42 176.8 184 52.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.8e-41 173.3 247 42.9
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.4e-41 172.9 187 50.3
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.1e-41 172.2 169 54.4
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 7.0e-41 171.4 187 49.7
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.0e-40 169.9 151 64.2
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 8.6e-39 164.5 184 47.8
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.2e-35 154.1 181 46.4
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.8e-35 151.8 221 41.6
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 7.5e-35 151.4 162 51.2
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-34 150.6 184 44.6
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.1e-33 147.5 149 53.7
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.8e-33 146.7 181 43.1
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.6e-32 142.1 125 58.4
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.0e-31 141.0 122 63.1
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 6.6e-31 138.3 184 44.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 6.6e-31 138.3 101 64.4
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.3e-30 135.6 90 75.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.6e-29 132.5 123 59.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.1e-28 129.4 128 54.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.1e-28 129.4 185 41.6
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 2.0e-27 126.7 156 44.2
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.3e-26 124.0 100 64.0
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.4e-25 120.6 84 72.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.2e-24 117.5 134 51.5
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.0e-24 116.7 145 47.6
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 5.0e-23 112.1 147 44.2
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.1e-22 110.9 99 56.6
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 7.3e-22 108.2 176 33.5
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.4e-19 99.0 110 45.5
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.9e-17 93.6 112 46.4
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.2e-16 90.9 62 67.7
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.7e-15 87.0 149 35.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.5e-14 83.2 69 59.4
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.5e-11 73.9 45 80.0
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.9e-10 69.7 110 39.1
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 6.4e-10 68.6 180 27.8
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.3e-07 60.8 50 60.0
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.3e-07 60.1 45 62.2


User provided reference genes

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