Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.2e-29 132.5 66 100.0
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.1e-19 99.4 64 79.7
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.5e-19 99.0 64 79.7
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.5e-19 99.0 64 79.7
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.5e-19 98.2 64 78.1
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.3e-19 97.8 64 78.1
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 4.2e-19 97.4 64 78.1
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.2e-18 95.9 52 90.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.4e-17 92.4 64 68.8
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.8e-17 92.0 59 76.3
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.3e-17 91.7 64 71.9
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 2.3e-17 91.7 64 70.3
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 3.0e-17 91.3 59 74.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.0e-17 90.9 59 76.3
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 5.2e-17 90.5 53 83.0
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 8.9e-17 89.7 59 74.6
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.2e-16 89.4 64 68.8
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 1.2e-16 89.4 59 74.6
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.2e-16 89.4 64 68.8
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.5e-16 89.0 59 72.9
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 2.0e-16 88.6 59 72.9
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 2.6e-16 88.2 59 72.9
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 4.4e-16 87.4 64 70.3
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 4.4e-16 87.4 59 72.9
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 5.7e-16 87.0 59 71.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 5.7e-16 87.0 59 69.5
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 5.7e-16 87.0 59 71.2
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 5.7e-16 87.0 59 72.9
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 7.5e-16 86.7 64 67.2
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 7.5e-16 86.7 60 70.0
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 9.8e-16 86.3 59 72.9
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 9.8e-16 86.3 62 66.1
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 9.8e-16 86.3 59 71.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 9.8e-16 86.3 64 67.2
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 9.8e-16 86.3 64 65.6
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 9.8e-16 86.3 64 65.6
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 9.8e-16 86.3 54 74.1
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 9.8e-16 86.3 50 84.0
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 69.5
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 69.5
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 71.2
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 71.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 71.2
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 71.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.3e-15 85.9 59 71.2
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.7e-15 85.5 59 67.8
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.7e-15 85.5 59 71.2
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.2e-15 85.1 62 66.1
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.2e-15 85.1 59 71.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 2.2e-15 85.1 64 68.8
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 2.2e-15 85.1 64 68.8
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 2.8e-15 84.7 59 71.2
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 2.8e-15 84.7 59 71.2
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.8e-15 84.7 62 71.0
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.8e-15 84.7 59 66.1
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.8e-15 84.7 59 69.5
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 2.8e-15 84.7 48 83.3
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.7e-15 84.3 63 66.7
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.7e-15 84.3 62 69.4
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 3.7e-15 84.3 59 69.5
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 3.7e-15 84.3 59 69.5
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.7e-15 84.3 62 69.4
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.7e-15 84.3 62 69.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.9e-15 84.0 59 69.5
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.9e-15 84.0 59 67.8
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 6.3e-15 83.6 59 67.8
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 6.3e-15 83.6 59 67.8
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 6.3e-15 83.6 59 67.8
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 6.3e-15 83.6 62 67.7
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 6.3e-15 83.6 59 67.8
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 8.3e-15 83.2 59 66.1
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 8.3e-15 83.2 59 69.5
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 8.3e-15 83.2 48 79.2
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 8.3e-15 83.2 64 64.1
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 8.3e-15 83.2 59 71.2
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 8.3e-15 83.2 59 71.2
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 8.3e-15 83.2 64 65.6
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 8.3e-15 83.2 59 71.2
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.1e-14 82.8 59 66.1
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.1e-14 82.8 64 64.1
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.1e-14 82.8 55 76.4
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.1e-14 82.8 59 71.2
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.4e-14 82.4 64 64.1
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.4e-14 82.4 59 69.5
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.8e-14 82.0 63 66.7
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.4e-14 81.6 64 64.1
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 2.4e-14 81.6 64 64.1
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.4e-14 81.6 64 65.6
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 3.1e-14 81.3 58 67.2
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 4.1e-14 80.9 59 66.1
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 4.1e-14 80.9 59 66.1
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 5.4e-14 80.5 59 69.5
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 5.4e-14 80.5 62 66.1
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.0e-14 80.1 59 66.1
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 7.0e-14 80.1 59 66.1
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 9.2e-14 79.7 59 69.5
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 9.2e-14 79.7 59 67.8
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.2e-13 79.3 59 64.4
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.2e-13 79.3 59 66.1
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 3.5e-13 77.8 59 67.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 7.8e-13 76.6 64 60.9
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 7.8e-13 76.6 59 62.7
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 6.6e-12 73.6 62 58.1
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 5.6e-11 70.5 50 68.0
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.2e-10 69.3 59 55.9
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.8e-10 68.2 59 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.4e-09 65.9 60 53.3
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.8e-09 65.5 55 56.4
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 3.4e-08 61.2 43 69.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 5.8e-08 60.5 44 65.9
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 2.9e-07 58.2 48 52.1


User provided reference genes

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