Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.1e-83 312.4 166 100.0
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.3e-72 273.9 177 80.2
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 4.9e-48 194.9 132 76.5
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 4.5e-33 145.2 136 61.8
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 5.5e-31 138.3 138 60.1
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.3e-29 133.7 138 57.2
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.3e-29 133.7 135 56.3
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 2.3e-29 132.9 136 57.4
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.9e-28 129.8 129 53.5
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.3e-27 127.1 138 54.3
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.3e-27 127.1 138 54.3
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 6.2e-27 124.8 129 51.9
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 8.2e-27 124.4 137 51.8
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 1.8e-26 123.2 182 46.2
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.4e-26 122.9 127 50.4
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.1e-26 122.5 136 52.2
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 3.1e-26 122.5 135 56.3
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 4.0e-26 122.1 134 53.0
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 5.3e-26 121.7 122 51.6
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 5.3e-26 121.7 139 50.4
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 6.9e-26 121.3 146 52.7
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.2e-25 120.6 150 50.7
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.6e-25 119.4 134 51.5
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.5e-25 118.6 139 51.8
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 7.6e-25 117.9 126 53.2
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 7.6e-25 117.9 122 54.1
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 7.6e-25 117.9 128 50.8
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.0e-24 117.5 135 51.1
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.3e-24 117.1 130 52.3
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.2e-24 116.3 147 49.7
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-24 116.3 147 49.7
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-24 116.3 147 48.3
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.2e-24 116.3 122 54.9
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 2.2e-24 116.3 139 51.1
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.8e-24 115.5 135 51.9
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 5.0e-24 115.2 141 50.4
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 5.0e-24 115.2 142 50.0
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 8.4e-24 114.4 141 50.4
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 8.4e-24 114.4 141 50.4
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 1.1e-23 114.0 144 47.9
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.9e-23 113.2 145 49.7
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 2.5e-23 112.8 143 48.3
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.5e-23 112.8 136 49.3
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 2.5e-23 112.8 138 47.8
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.2e-23 112.5 125 51.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 4.2e-23 112.1 144 47.2
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 4.2e-23 112.1 138 47.8
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 5.5e-23 111.7 139 50.4
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 5.5e-23 111.7 150 47.3
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 7.1e-23 111.3 126 50.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 7.1e-23 111.3 125 55.2
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.2e-22 110.5 139 50.4
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.2e-22 110.5 128 50.0
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.2e-22 110.5 144 46.5
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.6e-22 110.2 126 50.8
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 2.1e-22 109.8 131 49.6
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 2.1e-22 109.8 132 49.2
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.7e-22 109.4 72 75.0
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 3.5e-22 109.0 136 50.0
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 3.5e-22 109.0 127 52.0
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 4.6e-22 108.6 120 55.0
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 6.1e-22 108.2 143 46.2
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 6.1e-22 108.2 142 46.5
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 7.9e-22 107.8 136 49.3
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.3e-21 107.1 127 51.2
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.3e-21 107.1 145 45.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.8e-21 106.7 123 49.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 2.3e-21 106.3 158 47.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 3.0e-21 105.9 146 43.8
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 5.1e-21 105.1 93 59.1
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 6.7e-21 104.8 144 46.5
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 8.7e-21 104.4 156 43.6
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 8.7e-21 104.4 149 43.6
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 8.7e-21 104.4 125 45.6
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 8.7e-21 104.4 72 72.2
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.9e-20 103.2 142 46.5
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 2.5e-20 102.8 130 46.9
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.5e-20 102.8 131 45.8
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 4.3e-20 102.1 74 68.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.3e-20 102.1 146 43.2
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.6e-19 100.1 127 47.2
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.6e-19 100.1 60 76.7
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 2.2e-19 99.8 127 47.2
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 2.8e-19 99.4 125 44.0
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 3.7e-19 99.0 127 46.5
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 3.7e-19 99.0 127 46.5
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 4.8e-19 98.6 139 44.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 6.3e-19 98.2 139 44.6
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 8.2e-19 97.8 127 44.1
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.1e-18 97.4 151 42.4
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.8e-18 96.7 77 66.2
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 5.3e-18 95.1 115 51.3
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.6e-17 92.8 74 64.9
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 4.5e-17 92.0 55 74.5
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 5.9e-17 91.7 126 46.0
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.3e-16 90.5 120 47.5
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.0e-16 88.6 147 42.2
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.2e-14 84.0 55 74.5
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 1.6e-14 83.6 137 37.2
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.2e-11 71.2 47 68.1
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.1e-10 70.9 40 77.5
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 4.2e-07 58.9 30 93.3


User provided reference genes

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