Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.9e-176 620.9 295 100.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.5e-164 582.8 298 94.3
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.8e-133 479.6 310 73.5
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.4e-116 421.8 314 64.0
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 5.7e-116 421.4 319 63.0
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 7.5e-116 421.0 314 64.0
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.3e-115 420.2 314 64.3
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.3e-115 420.2 360 59.4
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.1e-114 417.2 317 61.8
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-113 413.3 315 62.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.7e-113 412.5 313 64.5
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 2.7e-113 412.5 320 63.1
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.7e-113 412.5 320 62.5
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 3.5e-113 412.1 316 63.6
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 3.5e-113 412.1 318 63.2
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.9e-112 409.1 321 62.6
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.1e-111 407.1 313 63.3
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 9.5e-111 404.1 314 62.4
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.2e-110 403.7 315 62.5
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.6e-110 402.1 330 60.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 3.6e-110 402.1 308 63.0
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 1.8e-109 399.8 318 62.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.8e-109 399.8 314 63.1
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.3e-109 399.4 319 59.6
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.1e-109 399.1 310 62.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 6.8e-109 397.9 319 60.8
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 8.9e-109 397.5 314 61.1
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 8.9e-109 397.5 317 59.9
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.6e-108 396.0 308 61.0
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 4.4e-108 395.2 310 62.3
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 4.4e-108 395.2 319 59.6
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.7e-107 393.3 310 59.7
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.9e-107 392.5 316 61.7
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.7e-107 392.1 310 61.9
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 3.7e-107 392.1 315 60.3
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 8.3e-107 391.0 318 59.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.1e-106 390.6 352 55.7
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.1e-106 390.6 316 57.6
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.9e-106 389.8 315 59.0
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 3.2e-106 389.0 311 61.4
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 2.7e-105 386.0 306 60.1
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 2.7e-105 386.0 306 60.5
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.0e-104 384.0 311 63.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.7e-104 383.3 316 59.2
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.1e-103 380.6 317 58.4
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.1e-103 380.6 317 58.7
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.1e-102 376.3 311 61.1
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 8.0e-102 374.4 308 59.7
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.4e-101 373.6 318 57.9
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 4.0e-101 372.1 311 59.2
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 6.8e-101 371.3 318 56.6
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.5e-100 370.2 317 57.4
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 5.8e-100 368.2 324 56.5
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 7.5e-100 367.9 313 60.4
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 9.8e-100 367.5 322 59.3
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.3e-99 367.1 321 56.7
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.7e-99 366.7 307 58.3
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 2.9e-99 365.9 311 57.6
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.9e-98 363.2 311 56.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 7.0e-98 361.3 318 56.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 7.8e-97 357.8 324 55.2
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 7.8e-97 357.8 311 55.9
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.7e-96 356.7 306 58.2
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 5.1e-96 355.1 316 55.7
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 6.6e-96 354.8 267 60.7
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 8.6e-96 354.4 324 54.3
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 8.6e-96 354.4 316 55.1
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.5e-95 353.6 316 55.7
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.5e-95 352.8 313 54.6
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.5e-95 352.8 268 65.7
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 5.6e-95 351.7 316 55.1
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 9.5e-95 350.9 316 52.2
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.6e-94 350.1 316 55.1
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 2.1e-94 349.7 316 56.0
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.8e-94 349.4 312 55.4
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 6.2e-94 348.2 313 55.3
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.4e-93 347.1 324 53.4
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.8e-93 346.7 311 55.3
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 5.8e-92 341.7 251 67.3
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.3e-91 340.5 316 54.1
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.7e-91 340.1 311 55.6
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 6.4e-91 338.2 311 56.9
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 3.2e-90 335.9 242 66.1
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 3.9e-88 328.9 316 53.8
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 6.2e-86 321.6 236 67.8
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.2e-86 321.6 263 62.4
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.0e-85 318.9 310 53.2
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.3e-83 313.9 256 60.5
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 3.8e-83 312.4 330 50.3
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 8.4e-83 311.2 236 64.8
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 3.2e-82 309.3 317 50.5
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 3.2e-82 309.3 324 48.8
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 4.2e-82 308.9 326 50.0
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 5.1e-80 302.0 333 51.1
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 3.6e-78 295.8 311 50.8
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.5e-73 279.3 252 54.4
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.0e-72 277.7 215 62.3
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.7e-72 276.9 292 49.0
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.6e-70 270.4 309 46.0
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 4.5e-68 262.3 208 59.1
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 4.5e-68 262.3 321 45.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.7e-67 260.4 317 42.9
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.6e-65 253.8 173 64.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.5e-63 246.5 270 48.1
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.1e-61 239.6 306 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.2e-60 237.7 225 52.0
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 2.6e-60 236.5 249 49.8
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 8.7e-56 221.5 156 64.1
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.9e-55 220.3 177 63.3
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 3.4e-52 209.5 226 50.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.3e-51 207.6 130 71.5
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 2.9e-51 206.5 174 60.3
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.4e-50 204.1 144 64.6
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.8e-48 197.2 316 36.7
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.3e-46 188.7 143 60.8
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.8e-37 160.6 219 41.6
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 2.9e-35 153.3 228 40.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.9e-34 150.6 236 36.4
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.6e-33 147.5 315 32.7
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 4.7e-33 146.0 143 55.9
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 5.1e-32 142.5 191 40.8
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.2e-28 131.3 94 62.8
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.2e-26 123.2 170 42.4
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 3.6e-17 93.2 61 68.9
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 4.7e-17 92.8 119 47.1
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.8e-14 83.6 51 70.6
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 4.8e-14 82.8 51 68.6
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 4.8e-14 82.8 59 59.3
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.7e-09 66.2 36 80.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.7e-09 66.2 47 63.8
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 3.0e-08 63.5 37 70.3
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.3e-06 58.2 31 80.6
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 8.3e-06 55.5 42 59.5


User provided reference genes

Program Settings