Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036193 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D033877 3.2e-40 167.9 83 100.0
CSS0019086 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D033877 4.6e-39 164.1 81 98.8
Actinidia32807 Actinidia chinensis HOM05D001069 ORTHO05D001549 2.2e-09 65.5 39 84.6
GSVIVG01036276001 Vitis vinifera HOM05D001069 ORTHO05D001549 6.5e-09 63.9 39 79.5
vmacro13825 Vaccinium macrocarpon HOM05D001069 ORTHO05D001549 8.5e-09 63.5 39 82.1
Hma1.2p1_0817F.1_g223140 Hydrangea macrophylla HOM05D001069 ORTHO05D001549 1.5e-08 62.8 39 82.1
Dinv08151 Davidia involucrata HOM05D001069 ORTHO05D001549 2.5e-08 62.0 39 74.4
Nn3g19513 Nelumbo nucifera HOM05D001069 ORTHO05D001549 2.5e-08 62.0 39 79.5
Dinv20293 Davidia involucrata HOM05D001069 ORTHO05D001549 4.2e-08 61.2 39 79.5
Atru.chr2.834 Acer truncatum HOM05D001069 ORTHO05D001549 5.5e-08 60.8 39 76.9
EL10Ac4g09162 Beta vulgaris HOM05D001069 ORTHO05D001549 7.2e-08 60.5 39 74.4
Manes.09G151900 Manihot esculenta HOM05D001069 ORTHO05D001549 7.2e-08 60.5 39 76.9
QL03p027228 Quercus lobata HOM05D001069 ORTHO05D001549 9.4e-08 60.1 39 74.4
Haze_04369 Corylus avellana HOM05D001069 ORTHO05D001549 1.2e-07 59.7 38 73.7
Prupe.6G344100 Prunus persica HOM05D001069 ORTHO05D001549 1.2e-07 59.7 39 74.4
RcHm_v2.0_Chr3g0450721 Rosa chinensis HOM05D001069 ORTHO05D001549 1.2e-07 59.7 39 74.4
TAR362G0632 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-07 59.7 39 76.9
TAR365G0140 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-07 59.7 39 76.9
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.6e-07 59.3 39 71.8
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.6e-07 59.3 39 76.9
CANSAT54G2615 Cannabis sativa HOM05D001069 ORTHO05D001549 2.1e-07 58.9 39 71.8
Sc06g0003690 Simmondsia chinensis HOM05D001069 ORTHO05D001549 2.1e-07 58.9 39 71.8
Dinv22471 Davidia involucrata HOM05D001069 ORTHO05D001549 2.7e-07 58.5 39 71.8
VMungo1383G3587 Vigna mungo HOM05D001069 ORTHO05D001549 2.7e-07 58.5 80 43.8
GSVIVG01000748001 Vitis vinifera HOM05D001069 ORTHO05D001549 2.7e-07 58.5 39 71.8
Gohir.A11G127820 Gossypium hirsutum HOM05D001069 ORTHO05D001549 3.6e-07 58.2 39 71.8
Gorai.007G142500 Gossypium raimondii HOM05D001069 ORTHO05D001549 3.6e-07 58.2 39 71.8
Peaxi162Scf01099g00031 Petunia axillaris HOM05D001069 ORTHO05D001549 3.6e-07 58.2 39 69.2
MD04G1225500 Malus domestica HOM05D001069 ORTHO05D001549 4.7e-07 57.8 36 77.8
MD12G1242500 Malus domestica HOM05D001069 ORTHO05D001549 4.7e-07 57.8 36 77.8
Medtr7g115240 Medicago truncatula HOM05D001069 ORTHO05D001549 4.7e-07 57.8 35 77.1
vmacro14865 Vaccinium macrocarpon HOM05D001069 ORTHO05D001549 4.7e-07 57.8 39 69.2
ATR0665G033 Amborella trichopoda HOM05D001069 ORTHO05D001549 6.1e-07 57.4 58 53.4
CSS0046589 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 6.1e-07 57.4 39 69.2
ClCG02G016720 Citrullus lanatus HOM05D001069 ORTHO05D001549 6.1e-07 57.4 39 71.8
COL.COLO4_05097 Corchorus olitorius HOM05D001069 ORTHO05D001549 6.1e-07 57.4 39 71.8
CsaV3_2G004020 Cucumis sativus L. HOM05D001069 ORTHO05D001549 6.1e-07 57.4 39 71.8
FAN05G0336 Fragaria x ananassa HOM05D001069 ORTHO05D001549 6.1e-07 57.4 45 64.4
MELO3C004389.2 Cucumis melo HOM05D001069 ORTHO05D001549 8.0e-07 57.0 38 73.7
FvH4_6g02710 Fragaria vesca HOM05D001069 ORTHO05D001549 8.0e-07 57.0 45 64.4
FAN02G0137 Fragaria x ananassa HOM05D001069 ORTHO05D001549 8.0e-07 57.0 45 64.4
FAN14G0993 Fragaria x ananassa HOM05D001069 ORTHO05D001549 8.0e-07 57.0 45 64.4
Glyma.19G161700 Glycine max HOM05D001069 ORTHO05D001549 8.0e-07 57.0 39 69.2
Manes.05G085200 Manihot esculenta HOM05D001069 ORTHO05D001549 8.0e-07 57.0 39 69.2
RcHm_v2.0_Chr6g0289351 Rosa chinensis HOM05D001069 ORTHO05D001549 8.0e-07 57.0 39 69.2
Sed0019819 Sechium edule HOM05D001069 ORTHO05D001549 8.0e-07 57.0 39 69.2
Actinidia21162 Actinidia chinensis HOM05D001069 ORTHO05D001549 1.0e-06 56.6 39 69.2
CSS0007284 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 1.0e-06 56.6 39 69.2
Eucgr.B02121 Eucalyptus grandis HOM05D001069 ORTHO05D001549 1.0e-06 56.6 39 66.7
FAN14G4032 Fragaria x ananassa HOM05D001069 ORTHO05D001549 1.0e-06 56.6 38 73.7
Rhsim01G0269000 Rhododendron simsii HOM05D001069 ORTHO05D001549 1.0e-06 56.6 39 66.7
Gohir.A07G209700 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
Gohir.D07G215800 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
Gohir.D11G133300 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
Gorai.013G104800 Gossypium raimondii HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
Manes.08G135600 Manihot esculenta HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
PSO170G5329 Papaver somniferum HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
Thecc.01G266500 Theobroma cacao HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
TWI12G1297 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 1.4e-06 56.2 39 69.2
CiPaw.03G258400 Carya illinoinensis HOM05D001069 ORTHO05D001549 1.8e-06 55.8 39 69.2
Cc01_g18760 Coffea canephora HOM05D001069 ORTHO05D001549 1.8e-06 55.8 39 66.7
Duzib133G0593 Durio zibethinus HOM05D001069 ORTHO05D001549 1.8e-06 55.8 39 69.2
Duzib211G0695 Durio zibethinus HOM05D001069 ORTHO05D001549 1.8e-06 55.8 39 69.2
Prupe.8G231300 Prunus persica HOM05D001069 ORTHO05D001549 1.8e-06 55.8 39 66.7
Thecc.05G281300 Theobroma cacao HOM05D001069 ORTHO05D001549 1.8e-06 55.8 35 77.1
Sabra10G0065300 Salix brachista HOM05D001069 ORTHO05D001549 2.3e-06 55.5 39 69.2
arahy.Tifrunner.gnm1.ann1.IVX6HA Arachis hypogaea HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 66.7
arahy.Tifrunner.gnm1.ann1.XI1KBX Arachis hypogaea HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 66.7
Ciclev10028433m.g Citrus clementina HOM05D001069 ORTHO05D001549 3.0e-06 55.1 35 77.1
FAN09G2351 Fragaria x ananassa HOM05D001069 ORTHO05D001549 3.0e-06 55.1 45 62.2
Glyma.03G159500 Glycine max HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 69.2
Gohir.A11G249000 Gossypium hirsutum HOM05D001069 ORTHO05D001549 3.0e-06 55.1 36 72.2
Gohir.D11G259800 Gossypium hirsutum HOM05D001069 ORTHO05D001549 3.0e-06 55.1 36 72.2
Gorai.007G278000 Gossypium raimondii HOM05D001069 ORTHO05D001549 3.0e-06 55.1 36 72.2
PSO017G4229 Papaver somniferum HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 66.7
Psat3g060040 Pisum sativum HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 64.1
Sabra05G0168000 Salix brachista HOM05D001069 ORTHO05D001549 3.0e-06 55.1 40 72.5
Sabra13G0038500 Salix brachista HOM05D001069 ORTHO05D001549 3.0e-06 55.1 39 66.7
AUR62000996 Chenopodium quinoa HOM05D001069 ORTHO05D001549 4.0e-06 54.7 40 72.5
AUR62004964 Chenopodium quinoa HOM05D001069 ORTHO05D001549 4.0e-06 54.7 40 72.5
FAN14G4752 Fragaria x ananassa HOM05D001069 ORTHO05D001549 4.0e-06 54.7 42 64.3
HanXRQChr07g0189041 Helianthus annuus HOM05D001069 ORTHO05D033877 4.0e-06 54.7 36 66.7
Lj2A1158G44 Lonicera japonica HOM05D001069 ORTHO05D001549 4.0e-06 54.7 38 71.1
Manes.03G169500 Manihot esculenta HOM05D001069 ORTHO05D001549 4.0e-06 54.7 39 66.7
Sabra08G0123300 Salix brachista HOM05D001069 ORTHO05D001549 4.0e-06 54.7 49 57.1
Hund22102 Selenicereus undatus HOM05D001069 ORTHO05D001549 4.0e-06 54.7 38 65.8
PGSC0003DMG400015075 Solanum tuberosum HOM05D001069 ORTHO05D001549 4.0e-06 54.7 39 64.1
TPR.G7010 Trifolium pratense HOM05D001069 ORTHO05D001549 4.0e-06 54.7 35 74.3
TAR633G1901 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.0e-06 54.7 39 71.8
MSTRG.18293 Avicennia marina HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 66.7
CiPaw.04G182600 Carya illinoinensis HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 66.7
CDE07G0350 Ceratophyllum demersum HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 69.2
Nitab4.5_0000187g0270 Nicotiana tabacum HOM05D001069 ORTHO05D001549 5.2e-06 54.3 38 65.8
Nitab4.5_0002680g0050 Nicotiana tabacum HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 64.1
QL12p042817 Quercus lobata HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 66.7
Solyc06g084040.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 64.1
Sopen06g035430 Solanum pennellii HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 64.1
PGSC0003DMG400020061 Solanum tuberosum HOM05D001069 ORTHO05D001549 5.2e-06 54.3 39 64.1
arahy.Tifrunner.gnm1.ann1.8YHQ6Y Arachis hypogaea HOM05D001069 ORTHO05D001549 6.8e-06 53.9 38 65.8
arahy.Tifrunner.gnm1.ann1.V7CRUC Arachis hypogaea HOM05D001069 ORTHO05D001549 6.8e-06 53.9 38 65.8
CANSAT35G1018 Cannabis sativa HOM05D001069 ORTHO05D001549 6.8e-06 53.9 39 66.7
FAN24G0273 Fragaria x ananassa HOM05D001069 ORTHO05D001549 6.8e-06 53.9 38 68.4
Potri.005G054400 Populus trichocarpa HOM05D001069 ORTHO05D001549 6.8e-06 53.9 39 66.7
Potri.005G219000 Populus trichocarpa HOM05D001069 ORTHO05D001549 6.8e-06 53.9 36 72.2
Potri.013G042000 Populus trichocarpa HOM05D001069 ORTHO05D001549 6.8e-06 53.9 39 66.7
THA.LOC104800803 Tarenaya hassleriana HOM05D001069 ORTHO05D001549 6.8e-06 53.9 39 66.7
Duzib177G1087 Durio zibethinus HOM05D001069 ORTHO05D001549 8.8e-06 53.5 35 71.4
FvH4_2g22360 Fragaria vesca HOM05D001069 ORTHO05D001549 8.8e-06 53.5 49 57.1
Phvul.001G157400 Phaseolus vulgaris HOM05D001069 ORTHO05D001549 8.8e-06 53.5 39 66.7
PGR142G3379 Punica granatum HOM05D001069 ORTHO05D001549 8.8e-06 53.5 39 64.1


User provided reference genes

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