Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.0e-91 340.1 176 100.0
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.7e-76 288.9 180 88.3
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.0e-63 246.1 129 94.6
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.0e-44 183.0 161 64.0
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 7.1e-37 157.9 160 58.1
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 6.4e-30 134.8 143 59.4
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.6e-25 120.2 120 57.5
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 6.9e-24 114.8 120 59.2
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.4e-23 112.1 150 50.0
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.7e-22 110.2 94 62.8
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.2e-21 105.9 144 45.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.6e-20 103.6 123 48.8
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.1e-20 103.2 147 46.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.7e-20 102.8 121 49.6
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.7e-20 102.8 120 50.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 3.5e-20 102.4 120 50.8
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.5e-20 102.4 147 49.7
Hma1.2p1_0356F.1_g134010 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 7.8e-20 101.3 96 62.5
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 7.8e-20 101.3 143 46.9
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.0e-19 100.9 120 50.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.0e-19 100.9 90 62.2
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.3e-19 100.5 118 50.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.7e-19 100.1 121 48.8
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.7e-19 100.1 121 48.8
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.7e-19 100.1 121 48.8
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 2.3e-19 99.8 96 61.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.0e-19 99.4 143 46.2
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.0e-19 99.4 123 46.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.0e-19 99.4 123 48.8
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 3.9e-19 99.0 93 63.4
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.1e-18 97.4 92 55.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.1e-18 97.4 120 48.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.1e-18 97.4 90 58.9
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.5e-18 97.1 148 41.9
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.5e-18 96.3 123 48.0
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.5e-18 96.3 90 58.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 4.3e-18 95.5 139 43.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 5.6e-18 95.1 144 44.4
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 9.6e-18 94.4 148 41.2
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.6e-17 93.6 143 42.0
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.8e-17 92.8 139 43.2
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 4.8e-17 92.0 143 40.6
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 4.8e-17 92.0 143 40.6
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 6.2e-17 91.7 120 48.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.1e-16 90.9 120 50.0
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.4e-16 90.5 143 42.7
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.4e-16 90.5 117 45.3
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.8e-16 90.1 141 43.3
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.8e-16 90.1 123 44.7
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.4e-16 89.7 142 42.3
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.4e-16 89.7 120 47.5
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.1e-16 89.4 102 48.0
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 3.1e-16 89.4 143 44.8
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.3e-16 88.6 92 54.3
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 6.9e-16 88.2 123 46.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 6.9e-16 88.2 139 41.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 9.0e-16 87.8 144 44.4
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.2e-15 87.4 117 42.7
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.5e-15 87.0 123 45.5
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.0e-15 86.7 120 47.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 3.4e-15 85.9 123 46.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 9.9e-15 84.3 178 35.4
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.3e-14 84.0 123 43.9
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.3e-14 84.0 141 41.1
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 2.2e-14 83.2 96 49.0
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.9e-14 82.8 123 40.7
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.9e-14 82.8 124 45.2
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.9e-14 82.8 123 43.9
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-14 82.8 178 34.8
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.8e-14 82.4 147 38.1
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.9e-14 82.0 101 48.5
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 4.9e-14 82.0 120 46.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.9e-14 82.0 92 48.9
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 4.9e-14 82.0 139 39.6
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.9e-14 82.0 166 35.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 4.9e-14 82.0 123 41.5
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.4e-14 81.3 145 36.6
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 8.4e-14 81.3 92 55.4
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 8.4e-14 81.3 121 42.1
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.1e-13 80.9 101 47.5
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.1e-13 80.9 141 43.3
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.1e-13 80.9 92 48.9
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.4e-13 80.5 92 47.8
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.4e-13 80.5 143 44.8
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.4e-13 79.7 141 43.3
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.4e-13 79.7 104 44.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.4e-13 79.7 90 47.8
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.4e-13 79.7 92 45.7
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.2e-13 79.3 105 44.8
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.2e-13 79.0 144 43.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.2e-13 79.0 95 52.6
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 5.4e-13 78.6 123 40.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 7.1e-13 78.2 123 43.1
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 9.3e-13 77.8 141 42.6
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.3e-13 77.8 144 37.5
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 1.2e-12 77.4 148 36.5
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.2e-12 77.4 91 51.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.6e-12 77.0 141 41.8
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.6e-12 77.0 141 41.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.6e-12 77.0 143 42.7
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.6e-12 77.0 143 42.7
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.1e-12 76.6 142 44.4
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.1e-12 76.6 144 36.1
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.7e-12 76.3 141 42.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.7e-12 76.3 141 42.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.7e-12 76.3 144 36.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.7e-12 76.3 92 50.0
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.7e-12 76.3 143 44.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.7e-12 76.3 143 44.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.7e-12 76.3 143 44.1
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.7e-12 76.3 145 39.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.7e-12 76.3 141 41.8
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.7e-12 76.3 93 49.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 3.5e-12 75.9 123 43.1
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 3.5e-12 75.9 141 41.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 3.5e-12 75.9 141 43.3
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 3.5e-12 75.9 143 44.1
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.5e-12 75.9 143 44.1
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.6e-12 75.5 141 42.6
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 6.0e-12 75.1 83 51.8
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.0e-11 74.3 100 48.0
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.0e-11 74.3 141 41.8
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.3e-11 73.9 74 54.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.0e-11 72.8 92 48.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 5.1e-11 72.0 102 40.2
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 8.7e-11 71.2 145 37.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.9e-10 70.1 145 35.2
Psat3g070400 Pisum sativum HOM05D002352 ORTHO05D015016 1.6e-09 67.0 83 47.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 4.8e-09 65.5 145 36.6
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 6.2e-09 65.1 90 42.2
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 8.1e-09 64.7 118 40.7
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.0e-08 62.4 100 40.0
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-07 60.8 100 41.0
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.4e-07 59.3 142 35.9
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 3.4e-07 59.3 108 38.9
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 4.5e-07 58.9 140 36.4
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 4.5e-07 58.9 100 40.0
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.9e-06 56.2 79 46.8
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 2.9e-06 56.2 113 39.8
CSS0047837 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 2.9e-06 56.2 27 100.0


User provided reference genes

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