Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036148 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 1.2e-71 273.1 140 100.0
CSS0009081 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 8.9e-67 256.9 146 93.8
CSS0015489 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 4.2e-32 141.7 153 60.1
Hma1.2p1_1875F.1_g306260 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 4.6e-31 138.3 153 58.2
Cfa015866 Carpinus fangiana HOM05D007903 ORTHO05D009925 1.4e-27 126.7 150 51.3
Haze_00633 Corylus avellana HOM05D007903 ORTHO05D009925 1.4e-27 126.7 150 52.7
Potri.008G122700 Populus trichocarpa HOM05D007903 ORTHO05D009925 1.6e-23 113.2 152 46.7
Sabra08G0093200 Salix brachista HOM05D007903 ORTHO05D009925 6.0e-23 111.3 147 49.0
Hma1.2p1_2787F.1_g328510 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 7.9e-23 110.9 129 55.8
TAR374G1449 Trochodendron aralioides HOM05D007903 ORTHO05D009925 2.3e-22 109.4 154 45.5
Peaxi162Scf00564g00039 Petunia axillaris HOM05D007903 ORTHO05D009925 7.4e-21 104.4 135 51.1
Aqoxy3G00252 Aquilegia oxysepala HOM05D007903 ORTHO05D009925 9.6e-21 104.0 160 45.6
PGSC0003DMG400006002 Solanum tuberosum HOM05D007903 ORTHO05D009925 2.8e-20 102.4 161 45.3
CiPaw.05G239700 Carya illinoinensis HOM05D007903 ORTHO05D009925 6.2e-20 101.3 160 43.8
CAN.G25.18 Capsicum annuum HOM05D007903 ORTHO05D009925 4.0e-19 98.6 165 46.7
Manes.14G104700 Manihot esculenta HOM05D007903 ORTHO05D009925 3.4e-18 95.5 152 44.7
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 5.8e-18 94.7 164 42.7
DCAR_030171 Daucus carota HOM05D007903 ORTHO05D009925 2.9e-17 92.4 164 43.9
Potri.010G122600 Populus trichocarpa HOM05D007903 ORTHO05D009925 3.8e-17 92.0 155 43.2
Solyc04g007360.1 Solanum lycopersicum HOM05D007903 ORTHO05D009925 4.9e-17 91.7 161 41.0
Oeu057730.1 Olea europaea HOM05D007903 ORTHO05D009925 6.5e-17 91.3 142 40.1
Thecc.02G225400 Theobroma cacao HOM05D007903 ORTHO05D009925 1.4e-16 90.1 158 43.0
QL01p040711 Quercus lobata HOM05D007903 ORTHO05D009925 2.1e-15 86.3 127 44.9
PGR119G1971 Punica granatum HOM05D007903 ORTHO05D009925 4.6e-15 85.1 152 38.8
Prupe.1G313800 Prunus persica HOM05D007903 ORTHO05D009925 1.0e-14 84.0 156 39.1
Sabra10G0092700 Salix brachista HOM05D007903 ORTHO05D009925 2.3e-14 82.8 159 42.1
Ciclev10017603m.g Citrus clementina HOM05D007903 ORTHO05D009925 3.0e-14 82.4 162 39.5
Lj5g0001705 Lotus japonicus HOM05D007903 ORTHO05D009925 5.1e-14 81.6 161 41.0
Lalb_Chr06g0165971 Lupinus albus HOM05D007903 ORTHO05D009925 5.1e-14 81.6 152 40.8
Duzib268G0450 Durio zibethinus HOM05D007903 ORTHO05D009925 9.6e-13 77.4 157 42.0
Sed0015064 Sechium edule HOM05D007903 ORTHO05D009925 1.6e-12 76.6 144 36.8
CANSAT01G0431 Cannabis sativa HOM05D007903 ORTHO05D009925 2.1e-12 76.3 160 38.1
Glyma.20G117500 Glycine max HOM05D007903 ORTHO05D009925 2.8e-12 75.9 139 41.7
MD16G1040300 Malus domestica HOM05D007903 ORTHO05D009925 2.8e-12 75.9 158 39.2
Gohir.A09G042700 Gossypium hirsutum HOM05D007903 ORTHO05D009925 3.7e-12 75.5 155 41.3
Sopen04g002420 Solanum pennellii HOM05D007903 ORTHO05D009925 3.7e-12 75.5 125 42.4
Dinv31619 Davidia involucrata HOM05D007903 ORTHO05D009925 2.4e-11 72.8 136 42.6
CsaV3_5G034450 Cucumis sativus L. HOM05D007903 ORTHO05D009925 5.3e-11 71.6 147 34.7
Lsat_1_v5_gn_3_57941 Lactuca sativa HOM05D007903 ORTHO05D009925 5.3e-11 71.6 74 56.8
MD13G1039400 Malus domestica HOM05D007903 ORTHO05D009925 1.2e-10 70.5 156 35.9
Sc04g0006190 Simmondsia chinensis HOM05D007903 ORTHO05D009925 1.2e-10 70.5 151 37.7
RcHm_v2.0_Chr4g0434841 Rosa chinensis HOM05D007903 ORTHO05D009925 2.6e-10 69.3 160 36.9
TWI31G0067 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 3.4e-10 68.9 156 37.2
Gohir.D09G043400 Gossypium hirsutum HOM05D007903 ORTHO05D009925 4.5e-10 68.6 155 39.4
THA.LOC104821918 Tarenaya hassleriana HOM05D007903 ORTHO05D009925 4.5e-10 68.6 161 34.8
Gorai.006G050300 Gossypium raimondii HOM05D007903 ORTHO05D009925 5.9e-10 68.2 155 39.4
FAN12G2568 Fragaria x ananassa HOM05D007903 ORTHO05D009925 7.6e-10 67.8 162 36.4
Thhalv10019802m.g Eutrema salsugineum HOM05D007903 ORTHO05D009925 1.3e-09 67.0 164 32.3
FvH4_4g27040 Fragaria vesca HOM05D007903 ORTHO05D009925 1.3e-09 67.0 163 36.2
FAN12G1984 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.3e-09 67.0 163 36.2
FAN07G0160 Fragaria x ananassa HOM05D007903 ORTHO05D009925 2.2e-09 66.2 161 35.4
FAN17G2767 Fragaria x ananassa HOM05D007903 ORTHO05D009925 2.9e-09 65.9 161 35.4
EL10Ac6g14355 Beta vulgaris HOM05D007903 ORTHO05D009925 6.5e-09 64.7 150 34.7
Sp5g23400 Schrenkiella parvula HOM05D007903 ORTHO05D009925 6.5e-09 64.7 157 32.5
AL2G27200 Arabidopsis lyrata HOM05D007903 ORTHO05D009925 1.1e-08 63.9 154 37.7
CARHR061060 Cardamine hirsuta HOM05D007903 ORTHO05D009925 1.1e-08 63.9 156 35.9
FAN22G0942 Fragaria x ananassa HOM05D007903 ORTHO05D009925 3.2e-08 62.4 164 34.8
Carub.0002s1485 Capsella rubella HOM05D007903 ORTHO05D009925 7.2e-08 61.2 155 34.8
AT1G68350 Arabidopsis thaliana HOM05D007903 ORTHO05D009925 1.2e-07 60.5 163 34.4
Migut.E00359 Erythranthe guttata HOM05D007903 ORTHO05D009925 1.2e-07 60.5 147 37.4
BcaB03g15412 Brassica carinata HOM05D007903 ORTHO05D009925 3.6e-07 58.9 163 31.9
BraA02t06557Z Brassica rapa HOM05D007903 ORTHO05D009925 6.1e-07 58.2 161 32.9
VMungo0720G0077 Vigna mungo HOM05D007903 ORTHO05D009925 6.1e-07 58.2 154 37.7
BcaB05g24366 Brassica carinata HOM05D007903 ORTHO05D009925 1.0e-06 57.4 159 32.1
Actinidia38376 Actinidia chinensis HOM05D007903 ORTHO05D009925 1.8e-06 56.6 42 73.8
BcaC08g45975 Brassica carinata HOM05D007903 ORTHO05D009925 3.0e-06 55.8 159 29.6
C06p37650 Brassica napus HOM05D007903 ORTHO05D009925 3.0e-06 55.8 159 29.6
BolC6t38868H Brassica oleracea HOM05D007903 ORTHO05D009925 3.0e-06 55.8 159 29.6
TWI79G1550 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 3.9e-06 55.5 70 44.3
Phvul.007G029300 Phaseolus vulgaris HOM05D007903 ORTHO05D009925 5.1e-06 55.1 152 35.5
ClCG05G022570 Citrullus lanatus HOM05D007903 ORTHO05D009925 6.7e-06 54.7 129 32.6
COL.COLO4_08991 Corchorus olitorius HOM05D007903 ORTHO05D009925 6.7e-06 54.7 133 35.3


User provided reference genes

Program Settings