Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.6e-124 448.7 230 100.0
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.2e-116 423.3 230 94.8
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.1e-105 384.4 230 85.7
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.5e-103 379.8 230 83.9
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.7e-102 376.3 230 83.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.1e-101 373.6 230 83.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.4e-101 372.5 229 81.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 4.1e-101 371.7 230 82.6
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-100 370.2 230 80.9
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.5e-100 369.8 228 82.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 5.9e-100 367.9 227 81.5
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 5.9e-100 367.9 227 81.5
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.7e-100 367.5 230 80.4
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.9e-98 362.8 227 79.3
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.5e-98 362.5 230 77.8
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.2e-97 360.1 230 77.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 80.2
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-97 359.4 229 78.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 78.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 78.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 4.7e-97 358.2 230 77.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 6.1e-97 357.8 229 79.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 6.1e-97 357.8 227 79.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 7.9e-97 357.5 229 77.3
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.4e-96 356.7 230 79.6
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.4e-96 356.7 227 79.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.8e-96 356.3 228 77.6
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.3e-96 355.9 229 79.0
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.9e-96 355.1 222 80.6
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 6.7e-96 354.4 227 78.4
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.1e-95 353.6 229 74.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-95 353.2 225 80.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.6e-95 352.4 227 75.3
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 3.3e-95 352.1 228 76.8
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-95 352.1 227 78.0
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 7.4e-95 350.9 229 73.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 7.4e-95 350.9 212 82.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.3e-94 350.1 230 74.8
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 78.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.2e-94 349.4 228 75.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.8e-94 349.0 225 80.0
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.7e-94 348.6 228 75.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.8e-94 348.2 228 75.0
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.1e-93 347.1 227 77.1
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-93 346.7 229 73.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.8e-93 346.3 230 73.9
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 3.1e-93 345.5 230 75.7
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.3e-93 344.7 264 69.7
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.0e-93 344.4 230 73.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.5e-92 343.2 222 79.7
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.5e-92 343.2 227 74.9
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.0e-92 342.8 228 74.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.0e-92 342.8 223 78.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-92 342.0 227 76.2
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.5e-92 341.7 228 74.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 5.9e-92 341.3 227 74.9
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.9e-92 341.3 219 79.9
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 7.7e-92 340.9 228 73.7
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.0e-91 340.5 228 74.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.0e-91 340.5 228 74.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.0e-91 340.5 229 74.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 76.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.7e-91 339.7 225 76.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-91 339.7 229 74.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-91 339.7 227 74.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-91 339.7 227 74.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.2e-91 339.3 225 76.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.8e-91 338.6 227 74.4
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 75.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 74.4
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 75.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 76.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 72.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.1e-90 337.0 228 72.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.4e-90 336.7 229 74.2
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.9e-90 336.3 225 73.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-90 336.3 227 74.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.2e-89 333.6 227 74.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.6e-89 333.2 228 72.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 3.6e-89 332.0 227 74.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 4.7e-89 331.6 230 71.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.0e-88 330.5 227 72.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 74.0
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.7e-87 324.7 224 75.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 5.7e-87 324.7 226 74.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.7e-86 322.0 225 71.1
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 6.3e-86 321.2 226 74.8
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 6.3e-86 321.2 224 69.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.2e-86 320.9 201 79.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.4e-85 320.1 223 73.1
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.8e-85 319.7 223 73.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.8e-85 319.7 223 73.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.4e-85 319.3 223 73.5
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.1e-85 318.5 224 74.1
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.1e-85 318.5 223 73.5
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.3e-85 318.2 225 71.1
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.3e-85 318.2 227 70.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.2e-84 317.0 229 72.5
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.6e-84 315.8 223 71.7
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 5.9e-84 314.7 225 70.2
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 7.7e-84 314.3 225 70.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-83 313.9 225 69.8
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-83 313.5 225 70.2
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-83 313.2 225 69.8
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.2e-83 312.8 225 70.2
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.9e-83 312.4 223 70.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 5.0e-83 311.6 229 67.7
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.5e-83 311.2 229 69.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.2e-82 308.9 225 68.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 5.5e-82 308.1 225 68.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 9.4e-82 307.4 224 69.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.7e-81 305.8 225 68.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-80 303.5 309 54.7
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.8e-80 303.1 227 70.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 3.0e-80 302.4 232 68.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.0e-79 299.7 204 73.5
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.6e-79 299.3 195 78.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.7e-78 296.6 225 66.2
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.1e-77 293.9 229 65.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.8e-77 293.1 180 85.0
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 5.3e-77 291.6 229 62.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.0e-77 291.2 230 67.4
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.6e-76 290.0 210 69.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.7e-76 289.3 188 77.7
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.1e-74 283.9 227 63.4
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-72 276.6 227 63.0
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.3e-72 276.2 197 70.1
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.8e-72 274.6 216 66.7
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-66 256.1 152 82.9
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.7e-63 245.0 235 57.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.3e-62 241.1 203 63.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-61 240.7 133 90.2
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.0e-60 236.5 213 61.0
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 7.8e-60 234.6 224 54.0
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.0e-59 234.2 144 80.6
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 5.6e-58 228.4 220 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.1e-56 222.6 230 49.6
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.8e-55 218.4 124 87.1
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.0e-52 209.9 228 50.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.0e-51 205.3 152 69.7
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.2e-47 194.1 140 70.7
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-46 189.1 119 76.5
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.7e-43 180.3 142 66.9
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-43 179.9 147 63.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.3e-43 179.9 131 69.5
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.1e-41 173.3 146 63.0
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 3.6e-41 172.6 139 60.4
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 9.9e-39 164.5 126 67.5
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.9e-38 162.9 218 43.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.1e-37 161.0 144 56.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.6e-36 155.6 185 45.4
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 8.6e-35 151.4 138 55.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 7.3e-34 148.3 85 84.7
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.5e-34 147.9 83 85.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 6.2e-33 145.2 109 68.8
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 6.2e-33 145.2 97 74.2
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 9.9e-31 137.9 197 44.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.3e-30 137.5 102 69.6
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 6.4e-30 135.2 124 58.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-29 132.5 108 62.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 7.8e-28 128.3 91 70.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-27 127.9 85 76.5
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.0e-27 127.9 85 71.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-27 127.1 82 78.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-26 123.6 95 68.4
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 5.6e-26 122.1 79 77.2
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 8.1e-25 118.2 77 77.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.1e-24 117.9 85 69.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.0e-23 113.6 69 81.2
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-23 112.8 147 47.6
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 5.8e-23 112.1 99 60.6
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.8e-23 112.1 85 67.1
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-18 97.1 61 78.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-17 94.4 51 88.2
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-16 90.5 102 50.0
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-14 82.4 84 56.0
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.4e-13 80.9 173 29.5
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.6e-12 77.4 72 56.9
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 6.0e-12 75.5 49 71.4
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 7.9e-12 75.1 220 29.1
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-10 71.2 67 55.2
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-10 69.7 60 58.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.4e-08 64.3 187 28.3


User provided reference genes

Program Settings