Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.6e-283 978.0 483 100.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.2e-245 852.0 487 86.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 7.7e-235 817.0 489 84.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.4e-231 806.2 486 81.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.7e-229 799.3 494 79.6
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.1e-228 796.6 486 81.1
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 4.5e-227 791.2 490 80.4
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.6e-224 782.7 497 78.1
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.6e-224 782.7 489 78.9
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.7e-224 781.9 487 79.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 8.0e-224 780.4 489 78.7
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 4.4e-222 774.6 492 78.9
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.7e-221 772.7 489 78.3
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 2.2e-221 772.3 492 78.7
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.8e-221 771.2 374 100.0
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.4e-220 769.6 490 78.2
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.8e-220 769.2 452 80.5
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.8e-220 769.2 487 78.2
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 5.3e-220 767.7 490 76.7
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.6e-219 766.1 425 86.1
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.6e-219 766.1 488 78.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 4.5e-219 764.6 488 77.7
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.5e-219 764.6 491 77.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.5e-219 764.6 487 76.8
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 7.7e-219 763.8 472 78.4
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 7.7e-219 763.8 490 78.6
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.7e-218 762.7 535 72.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.7e-218 762.7 487 76.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 2.2e-218 762.3 452 80.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 2.9e-218 761.9 488 77.5
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 6.5e-218 760.8 493 76.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 8.5e-218 760.4 451 80.9
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.9e-217 759.2 491 77.6
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.9e-217 759.2 487 76.4
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.2e-217 758.4 487 76.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.1e-216 755.7 487 75.8
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 4.4e-214 748.0 482 76.3
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 7.5e-214 747.3 497 75.7
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 7.5e-214 747.3 490 75.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 9.8e-214 746.9 497 75.5
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 9.8e-214 746.9 475 78.5
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.3e-213 746.5 528 70.8
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.3e-213 746.5 502 73.9
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.3e-213 746.5 489 75.7
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.7e-213 746.1 497 74.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.2e-213 745.7 497 74.6
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.2e-213 745.7 490 75.9
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.2e-213 745.7 487 74.7
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.2e-213 745.7 470 76.8
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.8e-213 745.3 431 81.2
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 3.1e-212 741.9 495 73.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 4.1e-212 741.5 485 75.3
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 4.1e-212 741.5 425 82.4
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.7e-211 738.8 488 74.8
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 5.9e-211 737.6 484 73.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.0e-210 736.9 492 74.8
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.8e-210 734.9 452 76.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 5.0e-210 734.6 487 72.7
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 6.5e-210 734.2 488 72.7
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 8.6e-210 733.8 425 80.7
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.5e-209 733.0 485 73.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.5e-209 733.0 489 74.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.9e-209 732.6 483 73.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 5.5e-209 731.1 494 71.9
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.5e-209 731.1 482 73.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.5e-209 731.1 482 73.2
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 5.5e-209 731.1 486 75.9
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 7.2e-209 730.7 487 72.7
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.2e-208 729.9 488 74.4
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.1e-208 729.2 425 80.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.1e-208 729.2 487 72.9
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.6e-208 728.4 432 78.7
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.3e-207 725.7 490 73.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 3.0e-207 725.3 424 80.0
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.2e-207 724.5 463 74.5
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.9e-207 723.8 494 72.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.0e-206 722.6 482 72.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.0e-206 722.6 482 72.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.8e-206 720.3 426 79.6
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.2e-205 719.2 430 80.0
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 4.9e-205 718.0 435 78.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 8.3e-205 717.2 494 72.9
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 5.4e-204 714.5 458 79.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 7.0e-204 714.1 444 78.4
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 3.5e-203 711.8 468 75.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 5.0e-202 708.0 438 77.9
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 8.6e-202 707.2 440 78.6
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.9e-201 706.1 403 82.9
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.2e-195 686.8 401 80.5
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 5.0e-194 681.4 405 81.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-192 676.8 546 64.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.4e-191 673.3 439 74.3
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.0e-191 671.8 463 70.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.5e-185 652.5 421 73.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 9.5e-185 650.6 374 81.6
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.9e-182 640.6 494 68.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.9e-181 639.0 410 73.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.0e-178 630.6 443 68.6
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.1e-177 627.1 493 66.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.9e-177 626.3 472 66.7
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 3.6e-176 622.1 340 87.1
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.5e-174 616.7 393 75.1
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.5e-171 605.5 374 77.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.3e-169 599.0 448 64.5
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.6e-168 596.7 390 73.6
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.9e-165 585.9 497 62.2
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 4.6e-163 578.6 407 69.0
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 5.1e-162 575.1 488 58.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 6.0e-155 551.6 326 83.1
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 5.1e-154 548.5 377 71.9
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 6.9e-151 538.1 438 60.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.5e-142 510.4 464 55.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.2e-131 474.2 256 88.3
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-123 447.6 293 71.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-123 447.6 293 71.7
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.9e-114 416.0 291 68.4
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 2.0e-113 413.7 344 61.3
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 7.4e-113 411.8 391 53.7
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 7.2e-108 395.2 266 71.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 9.4e-108 394.8 281 67.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.8e-106 390.6 260 71.2
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 6.7e-106 388.7 290 66.2
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.4e-90 337.8 383 45.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.3e-88 331.3 208 76.0
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 7.0e-87 325.5 239 73.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.1e-74 285.0 331 44.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 3.5e-70 270.0 249 55.8
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.5e-68 263.8 580 31.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.8e-49 199.5 458 31.7
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 7.6e-49 199.1 110 83.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 9.6e-44 182.2 151 63.6
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 6.2e-43 179.5 112 77.7
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 6.9e-34 149.4 88 80.7
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 3.2e-31 140.6 97 64.9
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 7.9e-22 109.4 60 76.7
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.3e-21 107.8 65 73.8
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 3.0e-21 107.5 64 75.0
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.9e-21 107.1 74 68.9
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 3.9e-21 107.1 65 73.8
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.1e-21 106.7 102 52.9
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 6.7e-21 106.3 65 72.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 6.7e-21 106.3 65 72.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.1e-20 105.5 66 71.2
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.9e-20 104.8 65 70.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-20 104.4 64 71.9
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 3.3e-20 104.0 65 70.8
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.3e-20 103.6 65 72.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 4.5e-17 93.6 66 74.2
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.5e-17 93.6 53 77.4
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.6e-14 83.6 69 62.3
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.7e-12 76.6 85 50.6
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.7e-08 65.1 45 68.9
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 8.5e-08 62.8 61 55.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 5.5e-07 60.1 43 67.4


User provided reference genes

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