Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 2.5e-133 478.8 246 100.0
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.1e-88 330.5 239 73.6
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 3.0e-86 322.4 236 72.9
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 4.2e-80 302.0 250 67.6
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 6.3e-76 288.1 241 62.2
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.4e-75 287.0 248 60.1
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 2.7e-74 282.7 239 64.4
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 2.7e-74 282.7 241 64.3
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 5.9e-74 281.6 246 62.6
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 1.3e-73 280.4 242 60.7
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.7e-73 280.0 252 64.3
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.9e-73 279.3 240 62.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 3.8e-73 278.9 242 66.9
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 5.0e-73 278.5 251 64.9
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 6.5e-73 278.1 246 58.1
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.9e-72 276.6 244 59.0
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 3.2e-72 275.8 192 69.3
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 5.5e-72 275.0 247 58.7
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 5.5e-72 275.0 247 58.7
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.2e-71 273.9 251 61.4
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.6e-71 273.5 249 57.4
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 4.7e-71 271.9 240 61.7
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 8.0e-71 271.2 244 59.8
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.8e-70 270.0 250 59.2
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.0e-70 269.2 224 65.6
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.5e-69 266.9 238 60.5
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 3.4e-69 265.8 244 60.2
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 5.7e-69 265.0 251 60.6
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.7e-68 263.5 191 69.6
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.8e-68 262.7 249 61.0
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 2.8e-68 262.7 244 63.5
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 4.9e-68 261.9 247 58.7
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 1.8e-67 260.0 238 58.8
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 2.4e-67 259.6 234 60.3
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 2.4e-67 259.6 235 59.6
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.1e-67 259.2 248 57.7
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 3.1e-67 259.2 249 55.4
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 3.1e-67 259.2 257 57.2
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 7.0e-67 258.1 240 58.3
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 7.0e-67 258.1 246 58.1
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 1.2e-66 257.3 247 56.7
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 2.7e-66 256.1 247 59.1
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 2.7e-66 256.1 254 58.3
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 4.5e-66 255.4 233 61.4
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.9e-66 255.0 193 67.9
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 5.9e-66 255.0 241 57.3
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 7.7e-66 254.6 249 57.0
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.0e-65 254.2 246 56.9
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.3e-65 253.8 242 56.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.3e-65 253.8 195 67.2
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 6.6e-65 251.5 252 56.0
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 6.6e-65 251.5 249 55.4
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 8.6e-65 251.1 234 64.5
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.1e-64 250.8 242 54.5
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 1.9e-64 250.0 248 54.8
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.9e-64 250.0 248 56.0
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 2.5e-64 249.6 251 56.2
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 3.3e-64 249.2 253 56.5
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 5.6e-64 248.4 248 52.8
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.3e-64 248.1 252 55.6
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 9.5e-64 247.7 256 55.9
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.1e-63 246.5 203 63.5
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 3.6e-63 245.7 243 55.6
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 3.6e-63 245.7 247 55.9
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 4.7e-63 245.4 253 55.7
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 6.1e-63 245.0 247 53.4
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 4.0e-62 242.3 251 53.8
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.0e-62 242.3 254 55.9
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.2e-61 240.7 242 53.7
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.2e-61 240.7 242 56.6
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-61 240.0 254 55.5
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.6e-61 239.6 136 85.3
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.4e-61 239.2 252 55.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 4.4e-61 238.8 242 53.3
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 4.4e-61 238.8 245 58.0
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 5.7e-61 238.4 243 58.0
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 7.5e-61 238.0 252 57.9
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.3e-60 237.3 239 61.5
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.9e-60 236.1 242 53.7
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 3.7e-60 235.7 238 56.3
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 3.7e-60 235.7 247 54.3
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.9e-60 235.3 238 56.3
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.8e-59 233.4 246 55.7
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.8e-59 233.4 203 60.1
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 5.4e-59 231.9 252 56.3
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 5.9e-58 228.4 242 54.5
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.4e-54 217.2 208 54.3
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.3e-54 216.5 220 53.6
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.2e-54 215.3 223 52.0
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 2.7e-50 203.0 194 57.7
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 2.7e-50 203.0 249 50.2
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 5.0e-49 198.7 244 47.5
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.6e-48 195.3 250 48.4
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.2e-45 187.6 198 47.0
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.4e-45 186.0 248 46.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 4.6e-42 175.6 189 47.1
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 5.6e-40 168.7 227 41.4
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 4.9e-36 155.6 189 46.6
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 1.1e-35 154.5 195 45.1
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.1e-26 123.6 241 40.2
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.1e-26 123.6 241 40.2
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.3e-24 116.3 145 48.3
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.8e-23 112.5 170 42.9
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.1e-22 111.3 170 42.4
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.1e-22 111.3 170 42.4
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.1e-22 111.3 240 35.4
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.4e-22 110.9 163 44.8
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 3.1e-22 109.8 149 53.7
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 2.6e-21 106.7 157 43.3
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 9.9e-21 104.8 154 48.1
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.3e-20 104.4 145 50.3
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.9e-20 103.2 122 46.7
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 2.9e-20 103.2 144 47.2
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 8.4e-20 101.7 158 45.6
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.4e-19 100.9 136 44.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 9.3e-19 98.2 162 40.7
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 9.3e-19 98.2 126 48.4
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 8.7e-17 91.7 110 46.4
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.1e-16 91.3 138 42.8
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 4.3e-16 89.4 138 41.3
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 4.3e-16 89.4 149 45.6
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.1e-14 84.7 122 43.4
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 6.9e-14 82.0 130 43.1
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 9.3e-11 71.6 67 53.7


User provided reference genes

Program Settings