Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-227 792.3 415 100.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-181 639.8 435 82.3
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-144 516.2 433 68.8
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 8.0e-140 501.1 433 66.7
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.0e-139 499.2 433 66.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.5e-138 496.9 433 66.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.4e-138 495.7 433 67.4
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.2e-137 493.0 435 66.9
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.2e-135 487.3 450 64.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.9e-134 482.3 431 65.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.1e-133 480.7 432 62.7
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 6.8e-131 471.5 431 64.3
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.0e-130 469.9 431 62.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.0e-130 469.9 431 62.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 6.4e-129 464.9 412 63.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.3e-129 464.5 431 63.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.4e-128 463.0 430 60.2
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.2e-127 460.7 433 62.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.6e-127 460.3 435 61.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.0e-127 458.4 438 61.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.3e-126 457.2 431 61.9
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 2.3e-126 456.4 430 61.6
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.3e-126 456.4 430 60.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 8.6e-126 454.5 430 61.6
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-125 454.1 431 61.0
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.6e-125 451.8 467 59.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.6e-124 450.3 433 60.5
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.4e-123 447.2 430 63.3
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 4.0e-123 445.7 433 61.0
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.2e-123 445.3 434 60.8
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 8.9e-123 444.5 433 59.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.5e-122 443.7 431 57.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.4e-122 442.2 478 57.9
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 4.4e-122 442.2 433 59.1
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 7.5e-122 441.4 431 59.9
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 9.8e-122 441.0 431 58.9
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 9.8e-122 441.0 431 60.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.7e-121 440.3 431 58.9
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.2e-121 439.9 433 61.0
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.2e-121 439.9 431 60.1
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.2e-121 439.9 386 65.0
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.7e-121 439.1 432 60.4
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.7e-121 439.1 421 60.8
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.9e-121 438.7 433 58.7
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 3.2e-120 436.0 429 60.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 7.1e-120 434.9 429 57.6
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.1e-119 433.3 434 61.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.0e-118 431.0 437 59.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.3e-118 430.6 431 60.6
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.3e-118 430.6 433 59.8
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.7e-118 430.3 435 59.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 8.6e-118 427.9 434 58.8
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 7.3e-117 424.9 433 56.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.1e-116 423.3 434 57.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.1e-116 423.3 432 59.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.7e-116 422.2 433 58.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.8e-115 420.2 428 57.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 2.3e-115 419.9 434 57.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 2.3e-115 419.9 432 57.4
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.1e-115 419.5 435 57.2
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 5.2e-115 418.7 433 57.7
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 6.8e-115 418.3 431 57.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 8.9e-115 417.9 421 59.1
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.0e-114 416.8 432 58.3
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.6e-114 416.4 439 56.5
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.6e-114 416.4 438 57.8
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.4e-114 416.0 436 58.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.7e-113 413.7 429 55.9
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.9e-113 412.9 426 60.6
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 4.9e-113 412.1 433 56.8
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 8.4e-113 411.4 432 56.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 8.4e-113 411.4 433 56.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.1e-112 411.0 432 56.0
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-112 411.0 430 57.0
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.9e-112 410.2 418 56.5
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.9e-112 410.2 434 56.5
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 5.4e-112 408.7 430 55.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 9.2e-112 407.9 415 57.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.2e-111 407.5 432 56.0
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.6e-111 407.1 412 59.0
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.1e-111 406.8 432 56.0
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.7e-111 406.4 431 57.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.5e-111 406.0 431 54.5
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 6.0e-111 405.2 431 55.7
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 2.3e-110 403.3 438 54.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 6.6e-110 401.7 435 54.9
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 8.6e-110 401.4 432 55.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.1e-109 401.0 435 55.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.1e-109 401.0 431 56.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.1e-109 401.0 431 56.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-109 400.6 429 55.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-109 400.2 435 54.3
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.9e-109 400.2 414 55.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 7.3e-109 398.3 416 58.4
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 8.1e-108 394.8 435 55.2
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.1e-108 394.8 515 50.3
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 8.1e-108 394.8 429 54.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.1e-107 394.4 432 55.3
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.1e-107 394.4 429 54.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 7.6e-106 388.3 434 53.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 9.9e-106 387.9 432 55.1
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.7e-105 387.1 416 54.1
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.8e-105 386.0 413 55.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.6e-103 380.6 436 52.5
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-103 380.6 431 54.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.5e-103 379.4 431 51.7
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 3.5e-103 379.4 414 55.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.7e-102 377.1 433 53.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.7e-102 377.1 435 53.3
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.3e-102 376.7 432 51.9
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 3.0e-102 376.3 373 58.4
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.7e-102 374.8 433 53.8
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.4e-99 367.5 429 52.4
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.5e-98 364.0 515 48.3
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 5.8e-98 362.1 431 52.7
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.9e-96 357.1 430 51.4
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-95 353.2 435 51.5
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.5e-93 346.7 437 52.4
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 5.6e-93 345.5 361 59.3
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.6e-92 344.0 410 51.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 3.1e-91 339.7 430 50.5
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 3.4e-90 336.3 284 68.7
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.9e-85 320.5 298 60.4
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 3.8e-81 306.2 301 58.5
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.5e-80 302.4 444 45.5
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 9.3e-72 275.0 276 55.1
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.3e-70 271.2 349 48.7
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.7e-69 265.8 430 44.4
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.4e-64 251.1 409 44.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.4e-62 244.6 408 40.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.2e-60 237.3 427 38.2
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.1e-59 231.9 203 68.5
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.7e-58 228.8 181 69.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.2e-57 227.3 251 53.4
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.2e-54 216.1 313 47.6
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.7e-52 209.9 165 76.4
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 9.4e-48 195.3 177 62.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.0e-43 179.1 151 72.8
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.2e-40 169.1 188 55.3
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.4e-40 168.7 171 56.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.7e-39 167.2 173 54.9
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 7.5e-37 159.1 223 46.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 3.6e-31 140.2 120 65.0
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 3.7e-28 130.2 110 65.5
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 8.3e-28 129.0 140 50.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.9e-20 104.0 89 60.7
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 8.0e-15 85.9 93 54.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.2e-12 77.8 79 57.0
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.8e-10 69.3 102 48.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 5.0e-09 66.6 366 24.3
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 6.2e-07 59.7 50 68.0
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 8.1e-07 59.3 53 60.4
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-06 58.9 56 60.7


User provided reference genes

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