Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.2e-147 525.0 257 100.0
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.3e-143 510.8 257 97.7
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.3e-129 465.7 257 88.7
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 7.4e-128 460.7 257 87.5
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 1.7e-127 459.5 257 87.5
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 5.3e-126 454.5 257 86.0
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 2.6e-125 452.2 257 84.8
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 3.5e-125 451.8 256 85.5
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 3.5e-125 451.8 257 85.6
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 4.5e-125 451.4 256 85.2
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 4.5e-125 451.4 257 85.2
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 5.9e-125 451.1 256 85.2
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 7.7e-125 450.7 257 84.8
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 7.7e-125 450.7 257 84.8
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 84.8
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 2.2e-124 449.1 257 84.4
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.2e-124 449.1 257 84.4
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 2.9e-124 448.7 257 84.8
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 84.8
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.8e-124 448.4 257 84.8
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 5.0e-124 448.0 257 84.4
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.5e-124 447.6 256 84.0
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.5e-124 447.6 256 84.0
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 1.1e-123 446.8 257 84.8
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.9e-123 446.0 257 84.0
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 3.2e-123 445.3 257 85.2
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 4.2e-123 444.9 257 84.0
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 7.2e-123 444.1 257 84.4
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 9.4e-123 443.7 255 83.5
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 82.9
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 2.7e-122 442.2 257 84.0
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.7e-122 442.2 255 84.3
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 2.7e-122 442.2 256 85.2
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 3.6e-122 441.8 255 85.1
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 6.1e-122 441.0 256 84.8
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 8.0e-122 440.7 256 84.8
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 8.0e-122 440.7 257 82.9
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 2.3e-121 439.1 257 83.3
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 3.0e-121 438.7 257 83.3
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 3.0e-121 438.7 254 82.3
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 6.7e-121 437.6 257 83.7
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 8.8e-121 437.2 258 83.3
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.2e-120 436.8 257 83.3
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 83.7
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 83.7
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.0e-120 436.0 257 81.7
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.3e-120 435.3 254 83.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 80.9
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 7.5e-120 434.1 257 82.9
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.3e-119 433.3 257 82.1
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.8e-119 432.2 271 78.6
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 2.8e-119 432.2 265 81.5
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 4.8e-119 431.4 257 81.3
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 82.1
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.1e-118 430.3 271 78.2
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.1e-118 430.3 257 82.5
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 1.8e-118 429.5 257 82.1
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.8e-118 429.5 254 82.7
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.1e-118 428.3 300 72.0
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.2e-117 426.8 256 81.2
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 5.9e-117 424.5 258 81.0
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 5.9e-117 424.5 256 80.9
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.9e-117 424.5 257 79.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.9e-117 424.5 257 79.8
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 79.4
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 81.3
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 81.3
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 81.3
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 3.8e-116 421.8 257 78.6
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 78.6
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 78.6
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 78.6
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 78.6
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 78.6
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 8.5e-116 420.6 257 78.6
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 2.5e-115 419.1 257 77.8
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 3.2e-115 418.7 255 79.6
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.5e-115 417.9 257 79.4
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 7.2e-115 417.5 257 79.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 79.4
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 79.4
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 79.4
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 2.7e-114 415.6 263 79.1
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 6.1e-114 414.5 257 77.8
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.0e-113 413.7 230 88.3
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.0e-113 413.7 257 79.0
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 1.2e-112 410.2 257 77.0
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 1.7e-111 406.4 254 79.1
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.8e-111 405.6 257 77.8
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 2.8e-111 405.6 253 78.3
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.1e-110 400.6 257 75.9
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.2e-108 396.0 257 77.4
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 9.5e-107 390.6 214 87.9
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.1e-106 389.4 281 72.6
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 8.8e-105 384.0 257 73.5
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 4.9e-103 378.3 250 73.6
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 6.3e-103 377.9 214 85.0
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 4.3e-99 365.2 257 72.8
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 7.3e-99 364.4 257 73.5
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.0e-98 360.9 223 79.8
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.8e-97 359.8 231 74.9
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.2e-95 352.8 256 69.1
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 6.2e-90 334.7 198 81.8
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.3e-87 327.0 247 66.8
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 1.7e-87 326.6 247 66.8
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 6.4e-87 324.7 249 64.7
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 6.6e-84 314.7 203 74.4
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 2.5e-83 312.8 251 64.5
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 1.2e-72 277.3 159 82.4
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.3e-68 263.8 170 74.7
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 6.2e-66 255.0 132 91.7
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 4.0e-65 252.3 153 77.8
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.0e-60 237.7 142 80.3
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.5e-59 233.8 254 50.4
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.3e-59 232.6 116 90.5
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 4.8e-58 228.8 247 47.8
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.8e-55 219.2 112 93.8
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 6.0e-53 211.8 198 59.1
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 3.0e-52 209.5 130 79.2
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.1e-49 199.5 273 41.0
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.5e-48 197.2 105 89.5
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.5e-48 197.2 156 64.7
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 5.8e-48 195.3 105 89.5
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.1e-45 186.8 114 80.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.3e-43 179.5 257 44.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 7.4e-43 178.3 105 82.9
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 3.7e-42 176.0 105 80.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 4.9e-39 165.6 104 81.7
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-34 150.6 91 75.8
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.5e-32 144.1 117 65.0
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.2e-26 123.6 67 89.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.7e-26 122.9 96 65.6
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.8e-23 112.8 102 58.8
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 9.7e-19 98.2 60 80.0
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 4.2e-14 82.8 60 70.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 7.2e-14 82.0 55 74.5
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 1.2e-08 64.7 40 80.0


User provided reference genes

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