Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 0.0e+00 1339.3 661 100.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 7.2e-292 1006.9 669 77.7
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 7.9e-291 1003.4 670 74.8
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 5.0e-285 984.2 636 77.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.8e-280 968.4 627 77.5
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.7e-269 932.6 655 73.6
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.4e-263 912.1 666 68.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.0e-261 904.4 676 70.0
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.5e-261 903.7 676 70.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.6e-257 892.1 675 67.4
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 9.8e-257 890.2 668 67.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.2e-256 889.0 665 67.2
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 4.9e-256 887.9 675 67.4
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.5e-254 881.3 667 67.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-253 880.2 670 66.1
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.8e-253 878.2 667 67.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 5.0e-253 877.9 672 66.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 6.6e-253 877.5 673 66.0
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.6e-253 877.5 673 66.0
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 8.6e-253 877.1 666 68.2
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.6e-253 877.1 667 66.9
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.6e-253 877.1 673 64.8
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.1e-252 876.7 679 66.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.1e-252 876.7 679 66.1
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-252 875.9 673 65.8
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-252 875.2 673 65.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.6e-251 872.8 579 73.7
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.6e-251 872.8 534 79.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.7e-251 871.3 672 67.3
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.1e-251 870.9 671 65.6
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.0e-251 870.5 669 65.3
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-250 869.0 673 65.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.0e-250 868.2 679 65.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 8.9e-250 867.1 668 66.3
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 2.6e-249 865.5 676 66.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.3e-248 863.2 613 69.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 2.2e-248 862.4 691 64.3
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.9e-248 861.3 661 65.1
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 8.3e-248 860.5 684 66.1
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.1e-247 860.1 561 73.4
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.2e-247 858.6 664 64.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-246 856.3 660 65.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.6e-246 856.3 667 66.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 3.5e-246 855.1 570 72.5
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 4.6e-246 854.7 671 66.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.3e-245 852.4 671 65.7
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.9e-245 851.7 577 72.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 8.6e-245 850.5 688 65.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.5e-244 849.7 680 65.1
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 5.6e-244 847.8 672 64.4
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 5.6e-244 847.8 672 64.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 3.6e-243 845.1 677 64.1
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 6.8e-242 840.9 558 72.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.2e-241 840.1 675 63.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.5e-241 839.7 688 65.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.4e-241 838.6 571 72.2
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 4.4e-241 838.2 668 64.1
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.3e-240 836.6 564 73.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.9e-240 834.7 676 64.9
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 8.3e-240 833.9 562 73.3
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.4e-239 833.2 543 75.0
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.0e-238 829.3 559 72.8
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 8.6e-237 823.9 571 70.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-236 823.2 563 71.4
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-236 823.2 563 71.4
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 7.3e-236 820.8 675 63.3
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 7.3e-236 820.8 675 62.8
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.1e-234 817.0 554 71.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.9e-234 813.9 675 61.6
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 3.7e-232 808.5 678 63.1
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.3e-232 807.4 660 63.3
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.1e-231 807.0 554 71.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.1e-231 805.1 554 70.8
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 7.1e-231 804.3 676 62.4
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.2e-231 803.9 660 63.6
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.7e-230 802.4 578 69.2
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 2.7e-230 802.4 565 71.0
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.0e-229 800.4 565 71.3
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.0e-229 798.9 554 70.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.6e-227 792.0 566 69.3
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 8.1e-227 790.8 579 70.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.3e-226 789.3 578 68.2
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.5e-225 786.6 683 60.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 5.8e-225 784.6 613 65.3
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 7.6e-225 784.3 680 60.4
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.2e-224 782.7 676 60.4
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.9e-224 782.3 577 68.8
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.9e-224 782.3 625 63.7
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.4e-224 781.2 682 60.9
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.4e-223 778.1 611 64.6
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.6e-222 776.5 680 60.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 6.6e-221 771.2 578 66.8
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-220 770.4 672 61.8
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.9e-220 769.6 605 66.4
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 6.2e-219 764.6 677 60.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.8e-218 763.1 666 60.7
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-217 760.0 674 60.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.5e-217 760.0 674 60.7
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.5e-217 760.0 568 66.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.0e-217 759.6 674 60.7
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.6e-217 757.7 536 69.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 5.4e-215 751.5 648 59.3
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.5e-212 742.7 531 70.1
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.3e-211 740.3 674 61.3
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.5e-209 733.4 670 58.5
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.4e-209 732.3 676 57.0
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-205 720.3 569 64.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 5.1e-205 718.4 671 58.9
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.1e-205 718.4 671 58.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.1e-205 718.4 671 58.9
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 8.7e-205 717.6 667 60.0
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 9.6e-204 714.1 535 67.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.1e-203 713.0 647 57.8
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.0e-202 708.8 671 57.2
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 3.0e-197 692.6 677 57.8
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.4e-194 683.7 633 57.2
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 6.9e-194 681.4 680 56.8
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.5e-188 662.9 683 54.0
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.1e-182 643.3 673 52.3
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.1e-180 637.5 579 58.5
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.7e-174 616.3 557 59.1
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.1e-174 615.1 447 67.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.0e-172 610.1 672 50.9
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.3e-164 582.8 529 58.4
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 3.0e-157 559.7 548 55.1
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.2e-155 553.5 521 59.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 5.2e-149 532.3 427 63.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.2e-143 513.1 568 49.3
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 6.6e-136 488.8 343 68.8
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.2e-123 447.2 407 55.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.7e-123 446.4 382 57.6
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.1e-109 401.7 292 67.8
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 9.6e-87 325.5 357 53.2
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.1e-77 295.4 635 33.1
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 4.1e-69 266.9 397 42.6
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 4.6e-65 253.4 667 31.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.2e-60 238.8 220 57.3
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 6.3e-46 189.9 162 57.4
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.4e-40 172.2 169 55.6
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.7e-35 155.2 296 33.8
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-25 122.1 77 77.9
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 7.5e-23 113.2 100 61.0
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-22 112.5 101 56.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-19 102.8 214 36.9
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 3.3e-18 97.8 160 34.4
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 2.9e-14 84.7 151 32.5
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 7.0e-13 80.1 157 37.6
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.7e-12 78.2 148 42.6
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.4e-08 65.9 58 62.1
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.2e-07 62.8 41 70.7


User provided reference genes

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