Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.8e-90 335.1 155 100.0
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.2e-50 202.6 210 51.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 4.9e-50 201.4 211 51.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 4.9e-50 201.4 206 53.4
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.9e-50 201.4 213 51.2
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.4e-50 201.1 215 51.6
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 6.4e-50 201.1 216 51.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 8.4e-50 200.7 218 51.4
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.1e-49 200.3 202 52.5
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-49 200.3 213 51.2
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.1e-49 200.3 210 51.9
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.1e-49 200.3 209 50.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.4e-49 199.9 202 52.5
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.4e-49 199.9 215 51.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.4e-49 199.1 209 51.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.4e-49 199.1 213 50.2
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.4e-49 198.0 218 50.5
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 5.4e-49 198.0 213 51.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.4e-49 198.0 209 50.2
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 7.1e-49 197.6 216 51.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 7.1e-49 197.6 202 52.0
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.2e-48 196.8 207 51.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.2e-48 196.8 223 49.8
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.2e-48 196.8 217 50.2
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.2e-48 196.8 207 51.2
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-48 196.8 212 50.9
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.6e-48 196.4 201 52.2
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.1e-48 196.1 218 50.5
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.1e-48 196.1 224 49.6
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.1e-48 196.1 208 50.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.1e-48 196.1 200 52.5
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.1e-48 196.1 209 50.2
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.1e-48 196.1 215 50.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.1e-48 196.1 222 50.5
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.1e-48 196.1 207 49.3
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 2.7e-48 195.7 219 49.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.7e-48 195.7 204 51.5
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 3.5e-48 195.3 178 54.5
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.5e-48 195.3 209 49.8
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.6e-48 194.9 210 50.5
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 4.6e-48 194.9 216 50.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.6e-48 194.9 207 51.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 6.0e-48 194.5 202 51.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 6.0e-48 194.5 218 50.0
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.0e-47 193.7 204 51.5
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.0e-47 193.7 222 48.6
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.0e-47 193.7 206 49.5
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.0e-47 193.7 211 48.8
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.3e-47 193.4 214 49.1
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.7e-47 193.0 221 48.4
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.7e-47 193.0 216 49.5
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.3e-47 192.6 201 51.2
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.3e-47 192.6 201 51.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 2.3e-47 192.6 213 49.3
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 2.3e-47 192.6 201 49.8
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.3e-47 192.6 201 51.7
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.3e-47 192.6 226 48.7
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.3e-47 192.6 226 48.7
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.0e-47 192.2 209 48.3
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 3.0e-47 192.2 209 48.3
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 3.0e-47 192.2 208 48.6
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.0e-47 192.2 212 49.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 3.9e-47 191.8 206 49.5
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.1e-47 191.4 222 48.6
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 5.1e-47 191.4 206 50.5
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 5.1e-47 191.4 211 47.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 6.6e-47 191.0 212 48.6
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 6.6e-47 191.0 201 51.2
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 8.7e-47 190.7 221 49.8
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 8.7e-47 190.7 221 49.3
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 8.7e-47 190.7 214 48.6
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.1e-46 190.3 214 49.1
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-46 190.3 208 50.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.1e-46 190.3 201 49.3
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.5e-46 189.9 209 49.8
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.5e-46 189.9 209 49.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.5e-46 189.9 213 49.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.5e-46 189.9 213 48.8
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.5e-46 189.9 202 51.0
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.5e-46 189.9 200 51.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.9e-46 189.5 221 47.1
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.9e-46 189.5 212 49.5
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.9e-46 189.5 201 50.7
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.5e-46 189.1 218 48.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.3e-46 188.7 214 45.8
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.3e-46 188.7 209 49.3
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 3.3e-46 188.7 206 49.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.3e-46 188.7 200 51.0
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 4.3e-46 188.3 209 47.8
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.3e-46 188.3 214 49.1
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 4.3e-46 188.3 214 48.6
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.3e-46 188.3 209 49.3
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 4.3e-46 188.3 207 49.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.3e-46 188.3 209 49.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.6e-46 188.0 212 47.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.6e-46 188.0 220 47.3
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 5.6e-46 188.0 215 47.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 5.6e-46 188.0 201 50.7
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 5.6e-46 188.0 200 49.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 7.3e-46 187.6 212 47.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 7.3e-46 187.6 212 47.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 7.3e-46 187.6 212 47.6
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 7.3e-46 187.6 201 49.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 9.6e-46 187.2 200 49.0
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.6e-45 186.4 215 46.5
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-45 186.4 209 49.3
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.6e-45 186.4 208 48.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-45 186.0 208 47.6
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-45 186.0 215 46.5
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 2.1e-45 186.0 201 49.3
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.1e-45 186.0 203 49.3
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.1e-45 186.0 203 49.3
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.8e-45 185.7 210 46.7
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.8e-45 185.7 201 48.8
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 3.6e-45 185.3 208 50.5
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.6e-45 185.3 200 49.5
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.6e-45 185.3 206 48.5
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.8e-45 184.9 203 48.8
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 8.1e-45 184.1 212 47.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 8.1e-45 184.1 208 49.0
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-44 183.7 212 47.2
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-44 183.7 200 48.5
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-44 183.7 200 48.5
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-44 183.7 212 47.2
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.1e-44 183.7 200 48.5
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.1e-44 183.7 212 47.2
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-44 183.7 204 48.5
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-44 183.7 206 47.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.4e-44 183.3 200 48.0
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 4.0e-44 181.8 214 47.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.3e-44 181.4 220 46.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.2e-43 180.3 207 48.3
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.0e-43 179.5 220 45.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.6e-43 179.1 204 47.1
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.6e-43 179.1 220 46.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 2.6e-43 179.1 209 46.9
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 5.8e-43 177.9 206 46.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 9.9e-43 177.2 211 45.5
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.7e-42 176.4 209 45.9
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.2e-41 172.2 206 45.1
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 6.0e-40 167.9 203 45.8
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.0e-39 165.6 221 43.4
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.9e-39 165.2 212 45.3
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 5.1e-39 164.9 199 44.7
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 9.6e-38 160.6 207 42.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.8e-36 156.4 227 40.5
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 3.1e-36 155.6 203 44.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.1e-36 155.6 167 50.9
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.0e-35 152.9 202 41.6
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 2.6e-35 152.5 194 43.3
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 3.4e-35 152.1 199 42.2
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 5.8e-35 151.4 103 68.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 9.9e-35 150.6 189 43.4
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-34 150.2 103 68.0
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 6.0e-32 141.4 182 41.8
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.5e-27 126.7 189 41.8
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 5.5e-25 118.2 100 55.0
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.5e-22 110.2 52 92.3
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.5e-17 92.8 93 54.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 4.6e-16 88.6 129 38.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.1e-12 77.4 74 52.7
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-12 77.0 178 29.2
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 9.0e-12 74.3 85 49.4
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.3e-10 70.5 50 62.0


User provided reference genes

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