Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 4.1e-99 365.2 249 100.0
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 3.3e-64 249.2 249 80.7
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 3.1e-62 242.7 193 67.9
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 5.8e-61 238.4 159 75.5
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 6.0e-58 228.4 193 64.8
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 1.8e-57 226.9 193 62.7
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 3.0e-57 226.1 192 64.6
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 2.5e-56 223.0 191 63.9
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.5e-56 223.0 191 63.9
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 5.3e-54 215.3 188 62.8
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.5e-53 213.8 201 57.7
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 2.0e-53 213.4 198 58.1
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 9.9e-53 211.1 189 61.4
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 9.9e-53 211.1 186 59.7
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 1.3e-52 210.7 187 59.9
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 1.3e-52 210.7 191 60.7
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 2.2e-52 209.9 194 57.2
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 2.9e-52 209.5 188 58.5
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 6.4e-52 208.4 183 62.3
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 6.4e-52 208.4 191 57.1
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 8.4e-52 208.0 184 59.2
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 2.4e-51 206.5 187 58.3
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.4e-51 206.5 223 54.7
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 2.4e-51 206.5 183 60.7
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 4.2e-51 205.7 191 57.1
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 9.3e-51 204.5 191 58.6
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 2.1e-50 203.4 204 56.9
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 4.6e-50 202.2 187 58.8
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 6.0e-50 201.8 199 56.8
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 6.0e-50 201.8 187 57.2
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 7.9e-50 201.4 188 57.4
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 1.0e-49 201.1 187 57.2
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 1.3e-49 200.7 187 55.6
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.3e-49 200.7 188 56.9
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 1.8e-49 200.3 189 57.7
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 3.9e-49 199.1 187 59.4
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 5.1e-49 198.7 187 55.6
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 6.7e-49 198.4 192 54.2
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 8.7e-49 198.0 183 56.8
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 8.7e-49 198.0 187 55.6
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 1.1e-48 197.6 184 58.2
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 2.5e-48 196.4 187 56.7
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 5.6e-48 195.3 188 54.3
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 7.4e-48 194.9 184 57.6
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 9.6e-48 194.5 186 57.0
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.3e-47 194.1 186 57.5
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 4.8e-47 192.2 191 57.1
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 6.2e-47 191.8 188 54.3
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 6.2e-47 191.8 183 55.7
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.4e-46 190.7 191 57.1
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 3.1e-46 189.5 188 53.7
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 4.5e-45 185.7 175 58.9
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 7.6e-45 184.9 201 54.2
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 1.0e-44 184.5 157 62.4
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 1.7e-44 183.7 216 48.6
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 1.7e-44 183.7 208 52.4
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 1.1e-43 181.0 190 52.6
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 1.9e-43 180.3 187 52.9
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 3.2e-43 179.5 187 52.4
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 2.7e-42 176.4 165 58.8
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 3.5e-42 176.0 154 62.3
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 7.9e-42 174.9 191 50.3
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 1.3e-41 174.1 155 60.0
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 1.3e-41 174.1 168 57.7
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 2.3e-41 173.3 191 49.7
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 3.0e-41 172.9 165 56.4
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 5.1e-41 172.2 190 49.5
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 8.7e-41 171.4 190 50.0
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 1.1e-40 171.0 191 47.6
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 1.1e-40 171.0 190 50.0
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 1.5e-40 170.6 159 59.7
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 1.9e-40 170.2 155 58.7
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 3.3e-40 169.5 186 48.4
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 4.3e-40 169.1 192 46.9
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 5.7e-40 168.7 192 47.4
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 5.7e-40 168.7 184 48.4
arahy.Tifrunner.gnm1.ann1.SHST7E Arachis hypogaea HOM05D005663 ORTHO05D007258 9.7e-40 167.9 137 62.8
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 1.3e-39 167.5 191 47.6
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 1.3e-39 167.5 184 47.8
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 1.3e-39 167.5 197 47.7
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 2.2e-39 166.8 182 53.3
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 3.7e-39 166.0 191 48.2
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 6.3e-39 165.2 186 48.4
Dinv15112 Davidia involucrata HOM05D005663 ORTHO05D007258 1.4e-38 164.1 94 86.2
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 3.1e-38 162.9 184 47.8
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 3.1e-38 162.9 192 47.9
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 4.1e-38 162.5 155 56.1
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 4.5e-37 159.1 167 53.3
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 8.5e-36 154.8 169 52.1
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 4.2e-35 152.5 165 53.3
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 9.4e-35 151.4 141 56.7
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 3.9e-33 146.0 197 46.7
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 1.5e-32 144.1 174 45.4
Atru.chr4.1055 Acer truncatum HOM05D005663 ORTHO05D007258 2.2e-31 140.2 160 50.0
Atru.chr4.1044 Acer truncatum HOM05D005663 ORTHO05D007258 3.7e-31 139.4 160 49.4
C03p04720 Brassica napus HOM05D005663 ORTHO05D007258 1.8e-30 137.1 168 45.8
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 7.7e-29 131.7 190 40.0
arahy.Tifrunner.gnm1.ann1.2XR3X5 Arachis hypogaea HOM05D005663 ORTHO05D007258 2.1e-26 123.6 148 50.7
arahy.Tifrunner.gnm1.ann1.B1HTRM Arachis hypogaea HOM05D005663 ORTHO05D007258 4.7e-26 122.5 157 49.0
COL.COLO4_22418 Corchorus olitorius HOM05D005663 ORTHO05D007258 4.7e-26 122.5 139 51.1
Dinv09933 Davidia involucrata HOM05D005663 ORTHO05D007258 5.1e-25 119.0 127 53.5
Sabra16G0195100 Salix brachista HOM05D005663 ORTHO05D007258 1.5e-24 117.5 139 51.1
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 7.4e-24 115.2 139 47.5
arahy.Tifrunner.gnm1.ann1.YJV2YZ Arachis hypogaea HOM05D005663 ORTHO05D007258 4.8e-23 112.5 138 46.4
Sc03g0004740 Simmondsia chinensis HOM05D005663 ORTHO05D007258 1.0e-20 104.8 138 44.2
TAR381G0497 Trochodendron aralioides HOM05D005663 ORTHO05D007258 6.5e-20 102.1 123 50.4
FAN28G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 7.2e-19 98.6 50 90.0
Lalb_Chr12g0203341 Lupinus albus HOM05D005663 ORTHO05D007258 8.0e-18 95.1 52 80.8
FAN23G0034 Fragaria x ananassa HOM05D005663 ORTHO05D007258 8.8e-17 91.7 105 51.4
Ca_17664_v3 Cicer arietinum L. HOM05D005663 ORTHO05D007258 3.3e-16 89.7 122 43.4
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 7.4e-16 88.6 104 43.3
Lalb_Chr12g0203331 Lupinus albus HOM05D005663 ORTHO05D007258 9.7e-16 88.2 122 42.6
arahy.Tifrunner.gnm1.ann1.4DFA8P Arachis hypogaea HOM05D005663 ORTHO05D007258 3.1e-14 83.2 104 46.2
BcaNung05557 Brassica carinata HOM05D005663 ORTHO05D007258 4.1e-14 82.8 135 37.8
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 2.0e-13 80.5 49 79.6
FAN19G2811 Fragaria x ananassa HOM05D005663 ORTHO05D007258 5.0e-12 75.9 79 55.7
COL.COLO4_22420 Corchorus olitorius HOM05D005663 ORTHO05D007258 1.1e-11 74.7 53 71.7
FvH4_1g28530 Fragaria vesca HOM05D005663 ORTHO05D007258 5.5e-11 72.4 78 53.8
CAN.G249.7 Capsicum annuum HOM05D005663 ORTHO05D007258 7.2e-11 72.0 49 73.5
arahy.Tifrunner.gnm1.ann1.3896ZX Arachis hypogaea HOM05D005663 ORTHO05D007258 1.6e-10 70.9 48 70.8
Cpa.g.c33395.2 Carica papaya HOM05D005663 ORTHO05D007258 1.6e-10 70.9 53 66.0
MD01G1001300 Malus domestica HOM05D005663 ORTHO05D007258 2.0e-08 63.9 50 64.0
Lj1A1237T45 Lonicera japonica HOM05D002234 ORTHO05D002254 4.8e-07 59.3 192 29.7
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 7.0e-06 55.5 167 29.3
Migut.H01594 Erythranthe guttata HOM05D002234 ORTHO05D002254 7.0e-06 55.5 218 27.5
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 9.1e-06 55.1 167 28.7
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 9.1e-06 55.1 167 28.7


User provided reference genes

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